PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g016375.1

Common Name

MTR_016s1015, MTR_6g016375

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 201aa MW: 23451.9 Da PI: 6.1522

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g016375.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.6	1.7e-15	90	144	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ +++ +++ Medtr6g016375.1 90 RKHRRMISNRESARRSRMRKQKHLDELWSQVLWLRNENHQLIEKLNHVSENHDQV 144 578********************************************99987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-13	86	150	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	88	151	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.1E-11	90	162	No hit	No description
SuperFamily	SSF57959	5.06E-13	90	140	No hit	No description
Pfam	PF00170	3.5E-13	90	142	IPR004827	Basic-leucine zipper domain
CDD	cd14702	5.59E-18	91	142	No hit	No description
PROSITE pattern	PS00036	0	93	108	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MQTREVTTGL NYMLPSNTSP YLQNYNNMIQ NNNISSYQLQ KFSNQIYGNY LNTPHQQFPD 60 FNYSPQSSCI SSNSTSDEAD EQNLSLINER KHRRMISNRE SARRSRMRKQ KHLDELWSQV 120 LWLRNENHQL IEKLNHVSEN HDQVVQENAQ LKEEALELRQ MIKDMQIHSP LIPSFSPLDD 180 TYLRDDSSNN SISSSMDLLG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	109	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g016375.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146721	0.0	AC146721.7 Medicago truncatula clone mth2-145n10, complete sequence.
GenBank	BT146028	0.0	BT146028.1 Medicago truncatula clone JCVI-FLMt-7A22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451170.1	1e-145	basic leucine zipper 43
Swissprot	Q9FMC2	1e-40	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	G7ZV06	1e-144	G7ZV06_MEDTR; BZIP transcription factor
STRING	AES83044	1e-145	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	4e-51	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Medtr6g016375.1
Entrez Gene	25495493

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]