PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g012670.1
Common NameMTR_6g012670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 322aa    MW: 37140.5 Da    PI: 4.7791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g012670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.11.2e-55201461129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL +kv ++++ +  +i e+d++k+ePwdLp +++ +ekewyfF+ rd+ky+tg r+nrat +gyWkatgkdke+++
  Medtr6g012670.1  20 LPPGFRFHPTDEELITHYLSQKVLDNSFCA-IAIGEADLNKCEPWDLPWRANMGEKEWYFFCVRDRKYPTGLRTNRATCAGYWKATGKDKEIYR 112
                      79*************************888.78***************888999**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++ l+g+kktLvfykgrapkgekt+Wvmhe+rle
  Medtr6g012670.1 113 -EKILIGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 146
                      .999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6116170IPR003441NAC domain
PROSITE profilePS5100557.17220170IPR003441NAC domain
PfamPF023656.2E-2921145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMDAMEKNSR DVESDEKFEL PPGFRFHPTD EELITHYLSQ KVLDNSFCAI AIGEADLNKC  60
EPWDLPWRAN MGEKEWYFFC VRDRKYPTGL RTNRATCAGY WKATGKDKEI YREKILIGMK  120
KTLVFYKGRA PKGEKTNWVM HEFRLEDTYS LRNISKRAMK EWSICRVFEK SSCGKKMDIQ  180
DLVSFNSIGK ELLPPLMDSS PYNSETKATI EDSSHVTCFN EPNLIDDYQI TQDNDNNIVG  240
SFDTPMLTSS YSSNPSYDNI SHVSWTPSLS HQSTQVGNSQ SFDVDISSMM YNNEMFQDSY  300
VNEEYSSDLV GHFDTGCLWN Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-541717614171NO APICAL MERISTEM PROTEIN
1ut4_B1e-541717614171NO APICAL MERISTEM PROTEIN
1ut7_A1e-541717614171NO APICAL MERISTEM PROTEIN
1ut7_B1e-541717614171NO APICAL MERISTEM PROTEIN
3swm_A2e-541717617174NAC domain-containing protein 19
3swm_B2e-541717617174NAC domain-containing protein 19
3swm_C2e-541717617174NAC domain-containing protein 19
3swm_D2e-541717617174NAC domain-containing protein 19
3swp_A2e-541717617174NAC domain-containing protein 19
3swp_B2e-541717617174NAC domain-containing protein 19
3swp_C2e-541717617174NAC domain-containing protein 19
3swp_D2e-541717617174NAC domain-containing protein 19
4dul_A1e-541717614171NAC domain-containing protein 19
4dul_B1e-541717614171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g012670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1227240.0AC122724.36 Medicago truncatula chromosome 6 clone mth2-14m14, complete sequence.
GenBankAC1484850.0AC148485.10 Medicago truncatula chromosome 6 clone mth2-46j5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618528.20.0NAC domain-containing protein 92
SwissprotQ9FLJ21e-105NC100_ARATH; NAC domain-containing protein 100
TrEMBLG7KKX50.0G7KKX5_MEDTR; NAC transcription factor-like protein
STRINGAES747460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-108NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]