PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g073620.1 | ||||||||
Common Name | MTR_5g073620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 1074aa MW: 123811 Da PI: 7.2364 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.5 | 1.7e-20 | 672 | 732 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W KYG Ke+ g +prsYYrC + C++kkkv++ + p+++e+ Y+g H+++ Medtr5g073620.1 672 EDGFTWTKYGMKEIPGFIYPRSYYRCNHVklyACRAKKKVQQLGDHPNIFEVRYNGGHTCR 732 7***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF74788 | 4.03E-77 | 249 | 594 | IPR016159 | Cullin repeat-like-containing domain |
Pfam | PF03081 | 9.3E-68 | 358 | 594 | IPR004140 | Exocyst complex protein Exo70 |
Gene3D | G3DSA:2.20.25.80 | 5.3E-19 | 669 | 732 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-18 | 670 | 733 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-23 | 671 | 733 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.26 | 672 | 734 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-19 | 672 | 732 | IPR003657 | WRKY domain |
Pfam | PF03081 | 4.8E-44 | 850 | 1063 | IPR004140 | Exocyst complex protein Exo70 |
SuperFamily | SSF74788 | 1.2E-33 | 854 | 1066 | IPR016159 | Cullin repeat-like-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006887 | Biological Process | exocytosis | ||||
GO:0000145 | Cellular Component | exocyst | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1074 aa Download sequence Send to blast |
MVHTLIQTWR WMMLPKVWRF VGFASSLVGL VCYALSSSFN YLFGEWNLLK IFLYSAFSFI 60 ICLVILFAKK LQHSSSLRFK AHSAFLVLTL TSIYSFFFDK VMNGKPDAYS LISCAAFAIM 120 SLSLSRQTQW GFEIDLLYFF LGCLIVQLMK IKLQLLILGA GFSYCLIILR SSFSSLDTGE 180 NSQYSSELQD ENSVILYVDS LQSPGVNNNI SLQSPSVNNN ISSATSSIDS PQLVISTNVG 240 SMMEQLGTYV KALEHENSNL IQVISEHVEK YVEEHSQLVV TDPNLMMDAL KPQTINDLEE 300 IAKVMCMAGF EKDFSDVYNN CRRECLDKCL MHKLFGLQKL SIEDVHNMSS KDLEDKIERW 360 IRTFNVALKV LFPSERRLCD RIFFGFSSAA DFSFMEICRE STIQLLNFFD YVSSGSHSPE 420 RLFKILEVFE TLRDMIPEFA SLFCDQYSMS LRNEATAIWK RLGKTIRDIF KELEYLIGRD 480 LTKVINFGGG LQPITQHVMN YLRVVCRSQQ TLEQVFYDSS LSSKIHRIID TLESNLEAKS 540 KCYVDPSLGY IFLINNHTYI VEMTKDNELG TLLGDYWLQK YTEKVWHYHR QYHKTKGAIA 600 SSVVLDFFRS NYERIRNIKG GEVLEVYQED MKEIEISPLQ PGERRKKLET EITTIVISPE 660 PQFGNTYKMP PEDGFTWTKY GMKEIPGFIY PRSYYRCNHV KLYACRAKKK VQQLGDHPNI 720 FEVRYNGGHT CRMSLTIPSL FVPARQPLDI SIDGIQSTMP TSSTLYSRRI SSGMPGKSIN 780 SMPEAKLAAP SKSEEYADPF LRRFFITGKS INSMPEAKLA APSKSEEYAD PFLRHFFMTG 840 KSINSMPEAK LAAPADGGHH LMMAKIMAYL LFAIRSQHIK VVNRDRTFSI QTEGTMELLE 900 SILASKSEEY ADPSLRHFFM MNNWKYLEVT NRPSDMDAVF GDDWLQKIRA KVQQNIELYQ 960 RNSWDKVLEF LKLDINDSME VNFVVDLMKE KISLFNKHFT ETCRVQCTWS IHYYKLRKEM 1020 IESLKNTLLP AYGIFIGRFQ DFLKTDAYEY IEYGMFDIHD ILDNLFLGNK KNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rl5_A | 2e-56 | 298 | 1073 | 137 | 562 | Exocyst complex component EXO70A1 |
4rl5_B | 2e-56 | 298 | 1073 | 137 | 562 | Exocyst complex component EXO70A1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole. Regulates autophagosome formation and autophagy-related Golgi-independent import into the vacuole. Positive regulator of both abscisic acid (ABA)-promoted and mannitol (drought)-promoted stomatal closure (PubMed:27956469). {ECO:0000269|PubMed:23944713, ECO:0000269|PubMed:27956469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g073620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144725 | 0.0 | AC144725.16 Medicago truncatula clone mth2-7m17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615896.2 | 0.0 | uncharacterized protein LOC11409580 | ||||
Swissprot | Q9FGH9 | 1e-114 | E70B1_ARATH; Exocyst complex component EXO70B1 | ||||
TrEMBL | G7JZS8 | 0.0 | G7JZS8_MEDTR; Exocyst subunit exo70 family protein | ||||
STRING | AES98854 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1741 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-24 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g073620.1 |
Entrez Gene | 11409580 |