PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g016510.1
Common NameMTR_5g016510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 317aa    MW: 34214.9 Da    PI: 8.3408
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g016510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-19550147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G+++W+ I++ ++ gR++k+c++rw + 
  Medtr5g016510.1  5 KGPWSPEEDEALQKLVEKHGPRNWSIISKSIP-GRSGKSCRLRWCNQ 50
                     79******************************.***********985 PP
2Myb_DNA-binding53.94.1e-1759101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Medtr5g016510.1  59 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 101
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.947155IPR017930Myb domain
SuperFamilySSF466891.68E-32298IPR009057Homeodomain-like
SMARTSM007171.2E-17453IPR001005SANT/Myb domain
PfamPF002496.5E-19550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-26658IPR009057Homeodomain-like
CDDcd001678.34E-17749No hitNo description
SMARTSM007172.9E-1456104IPR001005SANT/Myb domain
PROSITE profilePS5129420.75757106IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2359105IPR009057Homeodomain-like
PfamPF002491.3E-1459101IPR001005SANT/Myb domain
CDDcd001671.27E-1159102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDRIKGPWSP EEDEALQKLV EKHGPRNWSI ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF  60
TPEEDDTIIR AHARFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKCSSIM IDDSESPPLK  120
RSVSAGAAIP VSTGLYINAN SPGSPSGSDV SESSVPIVNT HVNSHVYRPV PTRTVAPLPL  180
VETTSPSNSN DPPTSLSLSL PGVGVDSSSE DSNRVTEPVN TAPPPPPPPP PSAIPLMPVM  240
TTAVPVPMAV PMQQSGSVMP FSFSAELLSV MQEMIRTEVR SYMAGLEQQN GMCFQKAEDG  300
IRNALVKRIG ISRIDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-4241053104MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-4241053104C-Myb DNA-Binding Domain
1msf_C3e-4241053104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.56720.0flower| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g016510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT5730770.0CT573077.3 Medicago truncatula chromosome 5 clone mth2-43j18, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611666.20.0transcription factor MYB44
SwissprotO231603e-98MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A396HN330.0A0A396HN33_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES946240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-81myb domain protein 73
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]