PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094908.1
Common NameMTR_4g094908
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 339aa    MW: 36940.7 Da    PI: 10.2907
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094908.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31267324359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Medtr4g094908.1 267 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDASMLVVTYEGEHNHS 324
                      99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.5E-17217263IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.9E-33253324IPR003657WRKY domain
PROSITE profilePS5081130.607260326IPR003657WRKY domain
SuperFamilySSF1182901.14E-26262325IPR003657WRKY domain
SMARTSM007748.8E-38265325IPR003657WRKY domain
PfamPF031068.7E-27267323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAVELMTGYN RNQSFTTKAE ENAVQEAASG LESVEKLIKL LSEARHKYQP SSSSSSSFSP  60
SNPNNNNNNP TMDIERDCKA VADIAVSKFK RVISLLEKTR TGHARFRKAP LPQPQPPPSQ  120
TLQFQPSEPM IFNATPLQQI PPTVSTTLHR PIIKRNDSSK TLNFSYSSAG NSFISSLTGD  180
DNNKQPSMSS PAGAFQITNL SHVSSVGKPP LSSSSLKRKC SSETLGSGKC GSSSSRCHCS  240
KKSRKMRLKR VVRVPAISLK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  300
KHVERALDDA SMLVVTYEGE HNHSLSAADA SNLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21253325273WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.167740.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094908.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0512680.0BT051268.1 Medicago truncatula clone MTYF1_F2_F3_F41G-K-3 unknown mRNA.
GenBankBT1455660.0BT145566.1 Medicago truncatula clone JCVI-FLMt-11M6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457446.10.0probable WRKY transcription factor 15 isoform X1
SwissprotO221763e-91WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A072UP790.0A0A072UP79_MEDTR; Putative transcription factor WRKY family
STRINGXP_004509108.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.14e-69WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  4. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]