PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g084550.1
Common NameMTR_4g084550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 185aa    MW: 21012.7 Da    PI: 8.4059
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g084550.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.58.1e-2262122257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++t+ ql +Leel+++  ++psae+++++A++l    +++ ++V++WFqN++a+e++
  Medtr4g084550.1  62 SSRWSPTPVQLLVLEELYRQgMKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 122
                      58*****************99**************************************97 PP

2Wus_type_Homeobox115.52.5e-3761124265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
    Medtr4g084550.1  61 PSSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 124
                        689***********************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1457126IPR009057Homeodomain-like
PROSITE profilePS5007111.61258123IPR001356Homeobox domain
SMARTSM003893.9E-860127IPR001356Homeobox domain
CDDcd000861.89E-661124No hitNo description
Gene3DG3DSA:1.10.10.608.1E-1063122IPR009057Homeodomain-like
PfamPF000461.7E-1963122IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSDSFCSFLS ATSNSNHNSH APSKITSIVQ PYCICTHCNH LLPFNHHLAE QGTSNIMHPQ  60
PSSRWSPTPV QLLVLEELYR QGMKTPSAEQ IQQIASQLRQ FGKIEGKNVF YWFQNHKARE  120
RQKRRRLEME ETTEDKKEKE KYVMGNSKKQ EGAETGGGVK ETKKWATTSN CSEQAEVCNF  180
SCLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g084550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505406.21e-84WUSCHEL-related homeobox 6 isoform X2
RefseqXP_012572552.11e-84WUSCHEL-related homeobox 6 isoform X1
SwissprotQ6X7K04e-35WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A072UYB21e-136A0A072UYB2_MEDTR; Wuschel-related homeobox protein
STRINGXP_004505406.18e-89(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151541012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-35WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]