PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g075480.3
Common NameMTR_4g075480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 311aa    MW: 34797.8 Da    PI: 7.034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g075480.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.8e-103584154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL  +v+ +k+L
  Medtr4g075480.3 35 RKTQKADREKLRRDRLNEQFLELGNILDPD----RPKNDKATILGDTVQLLKDL 84
                     6788999********************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.7E-1333107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-1333104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.0333484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-73584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-73589No hitNo description
SMARTSM003532.8E-74090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MCRNQFSSRG FWTCQRSLLE EFKSEVEPME ITPARKTQKA DREKLRRDRL NEQFLELGNI  60
LDPDRPKNDK ATILGDTVQL LKDLSSQVSK LKDEYTMLNE ESRELSQEKN DLREEKASLK  120
SDIENLNNQY QLQLRTMYPW PAMDHSVMMA PPSYPYPVPM PVPAGSIPMQ PYPYYANQHP  180
AVIPNPCSTY VPFLAPNTIV EQQSTQYVSP PLHPGSRSHV SGKQDSKNKS SRESKAQRNE  240
DSNDVATDLE LKTPGSSADQ DLTSAQKKSS KSSRKETSFT EGSSLGKCSS SHSVQDSSSS  300
SVVGSRKASE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.77960.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g075480.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944371e-147BT094437.1 Soybean clone JCVI-FLGm-24H6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456558.10.0transcription factor bHLH121 isoform X1
SwissprotQ9LT233e-93BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A072ULE00.0A0A072ULE0_MEDTR; Transcription factor
STRINGXP_004505689.11e-160(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-90bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]