PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g067290.1
Common NameMTR_4g067290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 298aa    MW: 33524.9 Da    PI: 5.694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g067290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.22.7e-28131218291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fYn+YA evGF +r+sk ++s+++g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a+++++k ++gkw++tk+++eH+H+l+p
  Medtr4g067290.1 131 FYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNP 218
                      ******************************************9988..9**************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-25131218IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLLLILCKHP NPTVCGFSES GKKMSSVVAV RGREQLNEML GFLEFEIDDS VNGDTVRDGA  60
MVEAGSIPDE YIEEESSAEP TYKQDQDDNV AQDSSGGGLI IPAAVPTLPG ASAEEPYVGQ  120
EFESEAAAHA FYNAYAAEVG FIIRVSKLSR SRKDGTAIGR ALVCNKEGYR MPDKREKIVR  180
QRAETRVGCR AMIMMRKINS GKWVITKFVK EHTHPLNPGS SRRDMFEIYP SQNEHDKIRE  240
LSQQLAIEKK RSVTYKRQLE VIFDYIEEHN VGLSRKMQRI VDSVKEMEPK EEEEHNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.184300.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g067290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456303.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_024637682.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_024637683.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
TrEMBLA0A072UKW20.0A0A072UKW2_MEDTR; FAR-RED impaired response-like protein
STRINGXP_004507429.11e-124(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-82FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]