PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g067290.1

Common Name

MTR_4g067290

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 298aa MW: 33524.9 Da PI: 5.694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g067290.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.2	2.7e-28	131	218	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA evGF +r+sk ++s+++g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++++k ++gkw++tk+++eH+H+l+p Medtr4g067290.1 131 FYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNP 218 ****************************************9988..9************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-25	131	218	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MLLLILCKHP NPTVCGFSES GKKMSSVVAV RGREQLNEML GFLEFEIDDS VNGDTVRDGA 60 MVEAGSIPDE YIEEESSAEP TYKQDQDDNV AQDSSGGGLI IPAAVPTLPG ASAEEPYVGQ 120 EFESEAAAHA FYNAYAAEVG FIIRVSKLSR SRKDGTAIGR ALVCNKEGYR MPDKREKIVR 180 QRAETRVGCR AMIMMRKINS GKWVITKFVK EHTHPLNPGS SRRDMFEIYP SQNEHDKIRE 240 LSQQLAIEKK RSVTYKRQLE VIFDYIEEHN VGLSRKMQRI VDSVKEMEPK EEEEHNH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.18430	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g067290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456303.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024637682.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024637683.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
TrEMBL	A0A072UKW2	0.0	A0A072UKW2_MEDTR; FAR-RED impaired response-like protein
STRING	XP_004507429.1	1e-124	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-82	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Medtr4g067290.1
Entrez Gene	25492669

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]