PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g067290.1 | ||||||||
Common Name | MTR_4g067290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 298aa MW: 33524.9 Da PI: 5.694 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90.2 | 2.7e-28 | 131 | 218 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA evGF +r+sk ++s+++g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++++k ++gkw++tk+++eH+H+l+p Medtr4g067290.1 131 FYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNP 218 ******************************************9988..9**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-25 | 131 | 218 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MLLLILCKHP NPTVCGFSES GKKMSSVVAV RGREQLNEML GFLEFEIDDS VNGDTVRDGA 60 MVEAGSIPDE YIEEESSAEP TYKQDQDDNV AQDSSGGGLI IPAAVPTLPG ASAEEPYVGQ 120 EFESEAAAHA FYNAYAAEVG FIIRVSKLSR SRKDGTAIGR ALVCNKEGYR MPDKREKIVR 180 QRAETRVGCR AMIMMRKINS GKWVITKFVK EHTHPLNPGS SRRDMFEIYP SQNEHDKIRE 240 LSQQLAIEKK RSVTYKRQLE VIFDYIEEHN VGLSRKMQRI VDSVKEMEPK EEEEHNH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18430 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g067290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456303.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 isoform X1 | ||||
Refseq | XP_024637682.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 isoform X1 | ||||
Refseq | XP_024637683.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 isoform X1 | ||||
TrEMBL | A0A072UKW2 | 0.0 | A0A072UKW2_MEDTR; FAR-RED impaired response-like protein | ||||
STRING | XP_004507429.1 | 1e-124 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 4e-82 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g067290.1 |
Entrez Gene | 25492669 |
Publications ? help Back to Top | |||
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