PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g008310.1
Common NameMTR_4g008310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 324aa    MW: 36495.8 Da    PI: 9.748
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g008310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.63.9e-17218305295
                      EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      +k ++ s+v +  +l lp++f+eeh +++   + +++lede+g + +  +   +k+  + l++GW+ F+  ++L++gD vvF+l++  +f+l++
  Medtr4g008310.1 218 IKSMVWSHVYRGFWLGLPRRFCEEHlQKV---DYKMVLEDEKGSEHDAVY--LRKK--TALSGGWRTFALKHKLDDGDAVVFELVEAARFKLFL 304
                      688999*******************5433...568***************..6776..45************************9989998876 PP

                      E CS
               B3  95 k 95 
                      +
  Medtr4g008310.1 305 R 305
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF148067.3E-134189IPR029446Coatomer beta subunit, appendage platform domain
Gene3DG3DSA:2.40.330.101.4E-17210308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20211309IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-19215306No hitNo description
SMARTSM010197.3E-14217308IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758217308IPR003340B3 DNA binding domain
PfamPF023622.5E-15218305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGPTPLQSAM LMGSPCFPNS IVWSQDNLIA VASGHKSCEC SALEGECGFL AANLYAKSVF  60
GEDALVNVSI EKQSDEGNRS IEAIARIFSY ASIYLFVFLI NNLCRFRVAA TASSLVLLLL  120
QILNHLLRPK SKTNVVLEPR RSSCARNTVP SYREEFGTDL PQLRKRSRSS SSSWGRSYTN  180
TARPLNEIKK ATDQERKRAL DAAEALQINL QSSNPSLIKS MVWSHVYRGF WLGLPRRFCE  240
EHLQKVDYKM VLEDEKGSEH DAVYLRKKTA LSGGWRTFAL KHKLDDGDAV VFELVEAARF  300
KLFLRKRNTF KWTTANEVRY SNL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.45093e-75flower| glandular trichome| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g008310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638267.11e-160B3 domain-containing protein Os05g0481400
SwissprotQ5KQI46e-45Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A072URX20.0A0A072URX2_MEDTR; B3 DNA-binding domain protein
STRINGAES680493e-83(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-39B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]