PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g466830.1 | ||||||||
Common Name | MTR_3g466830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18848.7 Da PI: 9.1089 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.8 | 1.2e-12 | 12 | 49 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ++s r++t+ kR++ ++KK +EL +LC+++ + i++s+ Medtr3g466830.1 12 SDSARKITYNKRKTSLIKKVNELTTLCGIDGCAIVYSE 49 7899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.946 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-15 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.94E-22 | 1 | 84 | No hit | No description |
SuperFamily | SSF55455 | 1.28E-20 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-5 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-13 | 12 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-5 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MRKKVKLAFM VSDSARKITY NKRKTSLIKK VNELTTLCGI DGCAIVYSEF HSEPEVWPSP 60 WEVQKVLTKF KSYSEFEQGK KKLNQESYLR ERIMKSKEQL MKLEKNNWET EKSLILFQCL 120 VKEDFVDTLN SNVLNDLAWE INEKLKEITS KANELDTSAT N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g466830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460430.1 | 1e-114 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A072UZC2 | 1e-112 | A0A072UZC2_MEDTR; MADS-box transcription factor family protein | ||||
STRING | XP_004500453.1 | 3e-80 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16302 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-40 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g466830.1 |
Entrez Gene | 25491061 |
Publications ? help Back to Top | |||
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