PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g450850.1
Common NameMTR_3g450850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 352aa    MW: 40004.1 Da    PI: 5.689
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g450850.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-1861159190
             FAR1   1 kfYneYAkevGFsvrkskskks......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 
                      +fY+ +A++  Fs+r+++ +ks      ++   ++kr+f C + g+ + +k+++++ +r+r+++r++C akl v+ ++   ++kw+v+ ++++H
  Medtr3g450850.1  61 SFYCLFARKNAFSIRRHHVYKSiknqseDNPLGVYKREFGCHRAGTISADKDNEVEDKRKRKSSRCSCGAKLLVNITTinsEKKWVVKYFNNNH 154
                      59********************765443233349**************************************9988776689************ PP

             FAR1  86 nHela 90 
                      nHel 
  Medtr3g450850.1 155 NHELL 159
                      ***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1661159IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSSEGRNEVI DGSLEYEDDE MIDSLTTVPE PQHGPLPQAN HIDDGVLYEG KLFNSDDEAY  60
SFYCLFARKN AFSIRRHHVY KSIKNQSEDN PLGVYKREFG CHRAGTISAD KDNEVEDKRK  120
RKSSRCSCGA KLLVNITTIN SEKKWVVKYF NNNHNHELLD DKEVKFLPAY QSIPAIDQDR  180
ILLLSKAGCS VSLIIRVLEL EKNVNAGNLP FLDKDIRNFI QSQSGFGKEF DASNVLKLCK  240
SLKDADNAFE YEFSIDENNK LEHIIWSFGD SVRAYEAFGD VIVFYTCAPR FSDIKPLVDL  300
NLQSLNSQFL FVGREKMSKN PYRDFGFGGW FRIGKVLSTL NDFGTPKEPL T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.196831e-96glandular trichome| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g450850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1452890.0AC145289.62 Medicago truncatula clone mth2-7g18, complete sequence.
GenBankAC1608420.0AC160842.52 Medicago truncatula clone mth2-27a2, complete sequence.
GenBankAC2255440.0AC225544.5 Medicago truncatula clone mth2-75e9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641282.10.0putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A072UV080.0A0A072UV08_MEDTR; FAR1 DNA-binding domain protein
STRINGAES987361e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-69FAR1-related sequence 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]