PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g448650.1 | ||||||||
Common Name | MTR_3g448650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 181aa MW: 21247.1 Da PI: 10.2146 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.9 | 4.3e-15 | 97 | 160 | 2 | 65 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkak 65 fYn YA++ GFs r+sk +++k+n+ i+++ fvC+++g+re++ ++ + ++r+ ra tr+gC+ + Medtr3g448650.1 97 FYNWYARMNGFSARRSKVRRNKNNE-IIQQIFVCYRQGFREKKLENnKIRKREARADTRCGCDQN 160 ********************96555.***************998884567778899999999754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.710 | 5.8E-4 | 72 | 124 | IPR023141 | Ammonia/methane monooxygenase, subunit B, helix hairpin domain |
Pfam | PF03101 | 2.0E-13 | 97 | 175 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTTNVRTRCP LTWTSKKRST NEPPYMTCYN SNDEQILSSS ENTSQFMEFG DIESDMKVGF 60 GFAIEGMEDI GKIDFKKLNA SDVMKFHFPN IAVAYTFYNW YARMNGFSAR RSKVRRNKNN 120 EIIQQIFVCY RQGFREKKLE NNKIRKREAR ADTRCGCDQN AYKTRLKNKS VEAWRTKRYA 180 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22879 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g448650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC138130 | 1e-175 | AC138130.9 Medicago truncatula clone mth2-31d24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635691.1 | 1e-109 | putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
TrEMBL | A0A072V5Y8 | 1e-132 | A0A072V5Y8_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES83683 | 5e-98 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3613 | 6 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-12 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g448650.1 |
Entrez Gene | 25490520 |
Publications ? help Back to Top | |||
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