PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g070040.1
Common NameMTR_3g070040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 336aa    MW: 37705.2 Da    PI: 5.935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g070040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.89.2e-45101313129
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                      ++frF Ptdeel+++yL kkv+++++ +  +i+evd++k+ePwdLp  +  ++ ++   + +++ky+tg+r+nrat++gyWka gkdke+++ +
  Medtr3g070040.1  10 VCFRFYPTDEELINHYLVKKVDDNSFCA-IAIAEVDMNKCEPWDLPV-I--TSVDLSVSCLTERKYPTGQRTNRATNAGYWKAIGKDKEIFK-G 98 
                      68***********************988.78***************3.3..234677889999*****************************.9 PP

              NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++l+g+kktLvfy grap+gekt+Wvmheyrle
  Medtr3g070040.1  99 NALIGMKKTLVFYIGRAPSGEKTNWVMHEYRLE 131
                      99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-497157IPR003441NAC domain
PROSITE profilePS5100545.4158157IPR003441NAC domain
PfamPF023651.4E-2211130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MENEKVKFSV CFRFYPTDEE LINHYLVKKV DDNSFCAIAI AEVDMNKCEP WDLPVITSVD  60
LSVSCLTERK YPTGQRTNRA TNAGYWKAIG KDKEIFKGNA LIGMKKTLVF YIGRAPSGEK  120
TNWVMHEYRL EGNTLSEHNL STHGMISEWV LSRVFEKKNC GKKKDGSKHG RFNSSREGPS  180
NTNESLLPQL LDSSPYNSEN QTTLSDFSQN KVKPKSQDDN IVHNNETSIL NISSSSKQLD  240
VYPLAEVIAA DLNQTSMVGN SSNFFFSQEQ LLLRMQLENE NIGTTSKNIF SFGRDSDADI  300
SSVVYGNGMF QKLSENQELS PASTGHVVND SLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-401216321171NO APICAL MERISTEM PROTEIN
1ut4_B7e-401216321171NO APICAL MERISTEM PROTEIN
1ut7_A7e-401216321171NO APICAL MERISTEM PROTEIN
1ut7_B7e-401216321171NO APICAL MERISTEM PROTEIN
4dul_A7e-401216321171NAC domain-containing protein 19
4dul_B7e-401216321171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.203090.0glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g070040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9610560.0CT961056.6 M.truncatula DNA sequence from clone MTH2-16N8 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600845.20.0NAC domain-containing protein 100
TrEMBLG7JAN30.0G7JAN3_MEDTR; ANAC079/ANAC080/ATNAC4 protein
STRINGAES710970.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-74NAC domain containing protein 100
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]