PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g068095.1 | ||||||||
Common Name | MTR_3g068095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 29588.2 Da PI: 8.404 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Medtr3g068095.1 57 YSCHFCKREFRSAQALGGHMNVH 79 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.32E-6 | 54 | 84 | No hit | No description |
Pfam | PF13912 | 1.9E-5 | 57 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.011 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEESLNMMWM KRKQILHSHN EVVPSFGTIN NRSWEEKAFA EDAARILGGC IWPPRSYSCH 60 FCKREFRSAQ ALGGHMNVHR RDRAKLKQSL NHHNELELHS HHKNHFTTSR DNSSTWPSTT 120 YTQENCFQPN MSSYSSSIKW GNNHKESLDS EQKGLANAKE QIFKGYGCND YVETSLSMGQ 180 NNSMFGQKLQ TEDDSCGGDK GINYKRPKTA SISSSLPVLL KPCLNDRCLT FQSAEFVIGV 240 KPGIEDLDLE LRLGKLTQKV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 52 | 79 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 52 | 79 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 87 | RRDRAKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g068095.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460707.1 | 0.0 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A072UZ72 | 0.0 | A0A072UZ72_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | GLYMA11G34285.1 | 1e-111 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-25 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g068095.1 |
Entrez Gene | 25489338 |
Publications ? help Back to Top | |||
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