PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104500.1
Common NameMTR_2g104500
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 276aa    MW: 30806.7 Da    PI: 8.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104500.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10105150555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR ++ ++f +L +++P +      K +Ka+i+  A++Y+ +Lq
  Medtr2g104500.1 105 HAMGERKRRLELAHKFIQLSTIIPRS-----NKTNKASIVAGATNYVEQLQ 150
                      8889*********************7.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.623100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-13101170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-7105154No hitNo description
PfamPF000101.6E-7105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-13105162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-9106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGVEYLLEMC HEEKEFIRDF MAQPVAGAAV AATESSSEMI VVSDESPELL PPSTSSRACI  60
ISLDNSAAIP LPAVMSKSKP PRCPTKKRTS ERGKGEKKNI KTLDHAMGER KRRLELAHKF  120
IQLSTIIPRS NKTNKASIVA GATNYVEQLQ KRVKELEAQQ NKRGKEPMIL FNKENSCEMN  180
LDNCFRPNEL LPDVKVKVSE NNILIYINCE KENGIQHKIL DMLQNLHLFV TSTSVLPFGN  240
STLAITIIAQ MGDAYKVTQM DLVDNIRQFM LKDAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113ERKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631425.10.0transcription factor bHLH19 isoform X1
TrEMBLG7IMA80.0G7IMA8_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682180.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1897525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-31bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]