PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g098920.1
Common NameMTR_2g098920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 265aa    MW: 29884.6 Da    PI: 5.7227
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g098920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.62.5e-2995182291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fYn+YA++vGF +r+sk ++s+r+g+++ r +vC+keg+r ++k++  k  r+raetr+gC+a+++v+k ++g w +tk+++eH+H+l+p
  Medtr2g098920.1  95 FYNSYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTP 182
                      ******************************************9988..9**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2695182IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSTTQVEIEI YDSGNGEALG NATIGEVGSS IANKEIVECS SFDPTDEQDQ DDTMTQDSSG  60
VDQIASAVPV TSVMRTIDEP YIGQEFVSEA EAHAFYNSYA TRVGFVIRVS KLSRSRRDGS  120
VIGRALVCNK EGFRMPDKRE KIVRQRAETR VGCRAMIMVR KLNSGLWSIT KFVKEHTHPL  180
TPGRGRRDFV YEQYPSGHDR VRELTQQLAI EKKRAETYKR NLDLLYECIE EHNEAVSKKI  240
QHIVESVKEM EAKEQESQFQ LAVI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.78620.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g098920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434070.0BT143407.1 Medicago truncatula clone JCVI-FLMt-16G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631464.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLG7IHU90.0G7IHU9_MEDTR; FAR-RED impaired response-like protein
STRINGAES677710.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-96FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]