PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g098920.1 | ||||||||
Common Name | MTR_2g098920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 265aa MW: 29884.6 Da PI: 5.7227 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.6 | 2.5e-29 | 95 | 182 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+++ r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++g w +tk+++eH+H+l+p Medtr2g098920.1 95 FYNSYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTP 182 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-26 | 95 | 182 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MSTTQVEIEI YDSGNGEALG NATIGEVGSS IANKEIVECS SFDPTDEQDQ DDTMTQDSSG 60 VDQIASAVPV TSVMRTIDEP YIGQEFVSEA EAHAFYNSYA TRVGFVIRVS KLSRSRRDGS 120 VIGRALVCNK EGFRMPDKRE KIVRQRAETR VGCRAMIMVR KLNSGLWSIT KFVKEHTHPL 180 TPGRGRRDFV YEQYPSGHDR VRELTQQLAI EKKRAETYKR NLDLLYECIE EHNEAVSKKI 240 QHIVESVKEM EAKEQESQFQ LAVI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7862 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g098920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143407 | 0.0 | BT143407.1 Medicago truncatula clone JCVI-FLMt-16G7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024631464.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | G7IHU9 | 0.0 | G7IHU9_MEDTR; FAR-RED impaired response-like protein | ||||
STRING | AES67771 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-96 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g098920.1 |
Entrez Gene | 11430032 |
Publications ? help Back to Top | |||
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