PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g098310.5 | ||||||||
Common Name | MTR_2g098310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 448aa MW: 50292.9 Da PI: 6.6282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.4e-10 | 344 | 424 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C.................................TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as..............................kapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ + k + a++L +Av+YIk+Lq Medtr2g098310.5 344 SIAERVRRTKISERMRKLQDLVPNmDKvlcfmigfnickvsnhtliyvnalrynvvsLLFLKQTNTADMLDLAVDYIKDLQ 424 689*********************988*****************************8777777*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.56 | 338 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.87E-8 | 342 | 428 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.4E-13 | 343 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-12 | 343 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-7 | 344 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 344 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-12 | 403 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-13 | 405 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MESDLHQQQQ PQVNSSGLTR FKSAPSSYFN NIIDREFYEH VFNKPSSPET ERVFSRFINS 60 FGSDDDLLAQ KISVDSTVKE EEEVNINQQQ QQQDQGLASI NNEHVVHQQS NYNNSVPSSH 120 GFYQSSMMPP LPNQNVSSGL DGSFSMGVNR LQQVKNHGGN NSNLIRHSSS PAGLFSQINI 180 ENGYVSMRGM GTLGAVNNSM KEAKFSTARS LKNQSNYSSG LMSTIDEVGD KDNRENNLEN 240 EAFGESHGNE YMDYPVDTWD DSEMMSENVG GLKRFRDNDS KQQFSGLNVQ NETGGGHSNS 300 PLAHQLSMPN TSSEMAAMEK FLHFSDSVPM KIRAKRGCAT HPRSIAERVR RTKISERMRK 360 LQDLVPNMDK VLCFMIGFNI CKVSNHTLIY VNALRYNVVS LLFLKQTNTA DMLDLAVDYI 420 KDLQKQAQKL QDCQAKCTCP HKQQQQQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.6286 | 0.0 | leaf| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g098310.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233177 | 0.0 | AC233177.2 Medicago truncatula strain A17 clone mth2-54k10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597460.1 | 0.0 | transcription factor bHLH130 | ||||
TrEMBL | A0A072VBS6 | 0.0 | A0A072VBS6_MEDTR; Transcription factor bHLH122-like protein | ||||
STRING | AES67711 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g098310.5 |
Entrez Gene | 11421472 |
Publications ? help Back to Top | |||
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