PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g075700.1 | ||||||||
Common Name | MTR_2g075700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 35718.1 Da PI: 5.8881 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.6 | 9.5e-22 | 143 | 204 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ ++++ rsYYrCt+ +C++ k+ver++e+p + + Y g+H+++ Medtr2g075700.1 143 MDDGHAWRKYGQKKIANTKYYRSYYRCTHMndqHCEAIKHVERTQENPPLYRTAYYGHHTCK 204 59***************************88889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-22 | 135 | 204 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.221 | 138 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-21 | 139 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-30 | 143 | 205 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-21 | 144 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MENLLWLPTN DKKAMEDELI RGRDMANQLL EALTYDDKSN IEVKGSNSKS SPVLPLIAGD 60 LVREVLKSLT NTLLLLNNCK DSNDVALPIT IRDFSFSTNC NKLEEDFDGS CKKLKTLNTK 120 NPKGSNKRKS ISPTWEKRTS ILMDDGHAWR KYGQKKIANT KYYRSYYRCT HMNDQHCEAI 180 KHVERTQENP PLYRTAYYGH HTCKSYLHSD INLESILSSN DSSILLSFDN NIPIKEENSF 240 PPSPLPFLAS TKEDPKEEIH DDYSSQNQLF SSDNLISCNF EVYFDYLRRA TMLSSIESFE 300 FENVYDQLGF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-19 | 143 | 204 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g075700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147713 | 0.0 | AC147713.21 Medicago truncatula clone mth2-138b11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596301.1 | 0.0 | probable WRKY transcription factor 63 | ||||
TrEMBL | G7IR31 | 0.0 | G7IR31_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES66552 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 5e-22 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g075700.1 |
Entrez Gene | 11413372 |
Publications ? help Back to Top | |||
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