PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g075680.1
Common NameMTR_2g075680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 307aa    MW: 35412.8 Da    PI: 7.6528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g075680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.32.7e-22148208259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK+++++++ rsYYrCt+    +C++ k+v+r +++p++  +tY g+H+++
  Medtr2g075680.1 148 DDGHTWRKYGQKMITNAKYFRSYYRCTHMydqHCEAIKHVQRIQKNPSLYRTTYYGHHTCK 208
                      8***************************98889**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-24133208IPR003657WRKY domain
PROSITE profilePS5081119.726142210IPR003657WRKY domain
SuperFamilySSF1182905.89E-22143208IPR003657WRKY domain
SMARTSM007742.0E-31147209IPR003657WRKY domain
PfamPF031061.4E-21148208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016874Molecular Functionligase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MENMLWLPTN YGKKAMEDEL IRGRDMANQL LEVLTFDDKS NIREVKGSNT KSSKVLPLNI  60
VAEDLVREVL KSLTNTLLLL NNGKDSNDVV VPITVKDFSF STNCHKMEED SDGAYKKLKT  120
LNTKNPKVSN KRKSSAPTWE KTASKLIDDG HTWRKYGQKM ITNAKYFRSY YRCTHMYDQH  180
CEAIKHVQRI QKNPSLYRTT YYGHHTCKSS YHSDLNLESI FSYDVDSSIL LSFDNNNISN  240
KQEYPFRPSP PLPLLASTKG DPKEEIHHDH FPQNQLFSPE NLQLCDFDVY FDYLRHVSES  300
SSSESF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-20145208669OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g075680.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1477130.0AC147713.21 Medicago truncatula clone mth2-138b11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596299.10.0probable WRKY transcription factor 62
TrEMBLG7IR290.0G7IR29_MEDTR; Cysteine-tRNA ligase
STRINGAES665500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.13e-23WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]