PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g075680.1 | ||||||||
Common Name | MTR_2g075680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 307aa MW: 35412.8 Da PI: 7.6528 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.3 | 2.7e-22 | 148 | 208 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK+++++++ rsYYrCt+ +C++ k+v+r +++p++ +tY g+H+++ Medtr2g075680.1 148 DDGHTWRKYGQKMITNAKYFRSYYRCTHMydqHCEAIKHVQRIQKNPSLYRTTYYGHHTCK 208 8***************************98889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.5E-24 | 133 | 208 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.726 | 142 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-22 | 143 | 208 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-31 | 147 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-21 | 148 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016874 | Molecular Function | ligase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MENMLWLPTN YGKKAMEDEL IRGRDMANQL LEVLTFDDKS NIREVKGSNT KSSKVLPLNI 60 VAEDLVREVL KSLTNTLLLL NNGKDSNDVV VPITVKDFSF STNCHKMEED SDGAYKKLKT 120 LNTKNPKVSN KRKSSAPTWE KTASKLIDDG HTWRKYGQKM ITNAKYFRSY YRCTHMYDQH 180 CEAIKHVQRI QKNPSLYRTT YYGHHTCKSS YHSDLNLESI FSYDVDSSIL LSFDNNNISN 240 KQEYPFRPSP PLPLLASTKG DPKEEIHHDH FPQNQLFSPE NLQLCDFDVY FDYLRHVSES 300 SSSESF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-20 | 145 | 208 | 6 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g075680.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147713 | 0.0 | AC147713.21 Medicago truncatula clone mth2-138b11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596299.1 | 0.0 | probable WRKY transcription factor 62 | ||||
TrEMBL | G7IR29 | 0.0 | G7IR29_MEDTR; Cysteine-tRNA ligase | ||||
STRING | AES66550 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 3e-23 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g075680.1 |
Entrez Gene | 11405706 |
Publications ? help Back to Top | |||
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