PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g016210.1
Common NameMTR_060s0023, MTR_2g016210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 244aa    MW: 26986.3 Da    PI: 4.7854
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g016210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85e-171152344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     i n+s r+ ++ kR++g+lKK +E+S+LC++e++ iif++++
  Medtr2g016210.1 11 IANSSSRKASYKKRKTGLLKKVNEISTLCGIEACAIIFGENN 52
                     89*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.287161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22185IPR002100Transcription factor, MADS-box
CDDcd002664.42E-31285No hitNo description
PRINTSPR004041.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTGRKVKLAY IANSSSRKAS YKKRKTGLLK KVNEISTLCG IEACAIIFGE NNAQPEVWPP  60
GPATKDVLSK FLHLPEIERS KNMVDLTAYL NQSIAKSQLL LRKQMEANKK NEFALFITKV  120
FSTRQYRVED VNVNELNDLA AFINDNLKEI DWRLQSAEIQ SQEEAGNGAE DMNGIGNEGN  180
KGDASGLVNV GDMQANMGNG AEVQGLDSNV KYGMESDYED PPWDFSMLAF HDVNTDINGL  240
WSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g016210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462567.10.0agamous-like MADS-box protein AGL80
TrEMBLG7ZXK21e-179G7ZXK2_MEDTR; MADS-box transcription factor family protein
STRINGAES839401e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1816226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-28AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]