PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g014680.1
Common NameMTR_2g014680, MtrDRAFT_AC158497g28v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 309aa    MW: 34806 Da    PI: 7.2504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g014680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.3e-32531931128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G++F+P+d e++ e+L++kv ++       ++++  +i+   +i++++P +Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  Medtr2g014680.1  53 LPAGVKFDPSDVEIL-EHLEAKVMSNVsklhplIDEFIpTIQGEnGICYTHPAQLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdeegiE 144
                      799***********9.99*****99995665443332333666657**********.555666777******************7554565666 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                       +W++tgk+++++s +g ++g kk+Lv+y++  ++ k+ekt+Wvmh+y+l
  Medtr2g014680.1 145 TRWHKTGKTRAIFS-NGVVKGFKKILVLYTNycKDGKPEKTNWVMHQYHL 193
                      78************.99************7645778888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-3648212IPR003441NAC domain
PROSITE profilePS5100531.33553212IPR003441NAC domain
PfamPF023651.7E-1454193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAWCNDKDNN NSDVTDNIKL NEEIDQNQTI ECPSCGHNIE VKNQGGVNEL PGLPAGVKFD  60
PSDVEILEHL EAKVMSNVSK LHPLIDEFIP TIQGENGICY THPAQLPGVS KDGQIRHFFH  120
RPSKAYTTGT RKRRKVHTDE EGIETRWHKT GKTRAIFSNG VVKGFKKILV LYTNYCKDGK  180
PEKTNWVMHQ YHLGMNEEER DGEFVASKIF YQTQPRQHGS NSINNVRDSY EKIINKGSDH  240
GNNSAAPNNV AHVECYNACY TNYDNMHVGH SRESTPQLII PNMAVQSNGT IIPLSMDHAN  300
KVRVLERK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.82240.0glandular trichome| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g014680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1584970.0AC158497.2 Medicago truncatula chromosome 2 clone mth2-48e18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593656.10.0NAC domain-containing protein 10
SwissprotF4HY611e-105NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA2Q5210.0A2Q521_MEDTR; NAC transcription factor-like protein
STRINGAES639070.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-108NAC domain containing protein 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]