PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g112270.1
Common NameMTR_1g112270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 583aa    MW: 61611.7 Da    PI: 9.6472
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g112270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0584106123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  Medtr1g112270.1  84 FICEVCNKGFQREQNLQLHRRGH 106
                      89*******************88 PP
2zf-C2H211.90.0007160182123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Medtr1g112270.1 160 WKCDKCSKKYAVQSDWKAHSKTC 182
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-683106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-783106No hitNo description
PfamPF121712.9E-584106IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005284106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9984106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355130125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-5148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-7155180No hitNo description
SMARTSM00355150160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MATSSSSASL FGFREEDPNP MNQQQHSLPP SSSTATPAAA PAPKKKRNQP GTPSKFLNYF  60
IANLYPDAEV IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP  120
KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQEGPRQPP ISLTGAIGSH LYGSSSNNNT  240
MGLSIAQVAA QMPNMQQQDH HSSNSATEIL RLGAAAANRS GQFDHHMLPQ ATFRPNSFFN  300
NNIHEPNQNF VPHDPSQQQG LMMQNSHNSN NSNLFNMPNF LSSNSTNSSN NSFSEHLNVN  360
NEGTNFFNGS GGTSSAPSLF SNVFSQGGNS NINAAAGTAI SSMSATALLQ KAAQMGATSS  420
NGNGTTATSL LKSFGNNTGA SNSTSSGGGD HSRVQMGGGS GNYGFGGGNH EQSNLQDLMN  480
SFAATGNTSI FDQSGGGGGG GVGLGRGGGD SSQLTRDFLG VGHEIVRSMS GVVGGQRDQH  540
AAAFNLAASL EGDQRNNINA AQSFGGGRGG AGGGGGAGAN FH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34156222369Zinc finger protein JACKDAW
5b3h_F1e-34156222369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1565573GGRGGAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.95900.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g112270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1604541e-170AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470290.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024627898.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-127IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A072VQQ40.0A0A072VQQ4_MEDTR; C2H2 zinc finger protein, putative
STRINGXP_004497164.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.12e-99indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]