PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g111310.1
Common NameMTR_1g111310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 709aa    MW: 79948.8 Da    PI: 7.5123
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g111310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1391.8e-1252106354
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkkeleelkk 54 
                      e k  rr+++NReAAr+sR+RKka++++Le+   + +++e e ++ ++++++lkk
  Medtr1g111310.1  52 EHKTLRRLMQNREAARKSRLRKKAYVQQLENsrlRLAQIEHELQQVRQQVQQLKK 106
                      56889*************************9555677777777777777777776 PP
2bZIP_134.16.1e-11419449333
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 
                      e k  rr+++NReAAr+sR+RKka++++Le+
  Medtr1g111310.1 419 EHKTLRRLMQNREAARKSRLRKKAYVQQLEN 449
                      56889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.8E-1145108No hitNo description
SMARTSM003386.2E-850110IPR004827Basic-leucine zipper domain
PfamPF001703.7E-1052107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.04852103IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-754108No hitNo description
PROSITE patternPS0003605772IPR004827Basic-leucine zipper domain
PfamPF141444.7E-28134208IPR025422Transcription factor TGA like domain
SMARTSM003381.2E-4417470IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002419463IPR004827Basic-leucine zipper domain
PfamPF001704.6E-8419450IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.14E-7421463No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-8423458No hitNo description
PROSITE patternPS000360424439IPR004827Basic-leucine zipper domain
PfamPF141444.7E-28509583IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MADNSQKTED FDTDDKNNQC LSTVSWCNGV GNEALVVVES KDQCKTKGQS DEHKTLRRLM  60
QNREAARKSR LRKKAYVQQL ENSRLRLAQI EHELQQVRQQ VQQLKKIFHL VKLVCSVAFD  120
MDYARWVDEH QRLINDIRSA INSQMGDNEL HLLVDGVMVH YDELYKLKSI GAKADVFHIL  180
SGLWKTPAER CFMWLGGFRS SELLKIIRNH LEALTDQQLM AIFNLQHSCQ QAEDALSQGM  240
EGLQQSLSET LSSTSTGSGN VVEYMGQMAL SMAKLSTLET FIHQADILRQ QTLQQMRRIL  300
TAHQAARALL VINDFISRIR ALNSLWHVFG AKSNNVTVVA SNLQYGTFNS NIGSASSSGM  360
ADNSQKTEDF DTDDKNNQSG NVLIFLCLST VSWCNGVGNE ALVVVESKDQ CKTKGQSDEH  420
KTLRRLMQNR EAARKSRLRK KAYVQQLENS RLRLAQIEHE LQQVRQQGTF VAPGVTADHG  480
HSIVGNSNAG SVAFDMDYAR WVDEHQRLIN DIRSAINSQM GDNELHLLVD GVMVHYDELY  540
KLKSIGAKAD VFHILSGLWK TPAERCFMWL GGFRSSELLK IIRNHLEALT DQQLMAIFNL  600
QHSCQQAEDA LSQGMEGLQQ SLSETLSSTS TGSGNVVEYM GQMALSMAKL STLETFIHQA  660
DILRQQTLQQ MRRILTAHQA ARALLVINDF ISRIRALNSL WSAFPKEY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g111310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354731e-81AC235473.1 Glycine max strain Williams 82 clone GM_WBc0110I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630929.10.0transcription factor PERIANTHIA-like
SwissprotQ0JNL31e-133TGA23_ORYSJ; Transcription factor TGA2.3
SwissprotQ6IVC21e-133TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A072VS380.0A0A072VS38_MEDTR; BZIP family transcription factor
STRINGXP_004497113.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-124bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]