PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g109320.1
Common NameMTR_1g109320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 358aa    MW: 39343.9 Da    PI: 7.7151
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g109320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.9e-15274299126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ +++tGtC+yGd C+FaHg
  Medtr1g109320.1 274 FKTELCNKWQETGTCPYGDHCQFAHG 299
                      79***********************8 PP
2zf-CCCH18.34.1e-06312336125
                      --S---SGGGGTS.--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                      ykte Cr  ++ G  C+yG rC+F H
  Medtr1g109320.1 312 YKTEVCRMVLA-GvVCPYGHRCHFRH 336
                      9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.8E-19269306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-11270305IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004273301IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11307340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-8307341IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803311339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MHNKDVCSPS SKSGYGIGVN NAGHMQSNAG VFASLYSALS NDLPSSLAGN SSNGGGFSLY  60
PYSDLGTEYD SCVIQKHQDM VNRHSMFLSR LLESSKEVEA LQQENGQLRA VNKELQKNLN  120
LLVQASLENR FNGGGSSVQT QSTPFDVLQG FRGLNLGDGK ENCADWNSNN INNNNKELQE  180
ASESDESPTS VIENNGVETE RFSLPKSISV RSNGYLKLAP PPAVVTNNNA CRTKGATRSR  240
ASSTQSDTVQ KVFVRGGQKE EEPLEMVVYN QGMFKTELCN KWQETGTCPY GDHCQFAHGI  300
GELRPVIRHP RYKTEVCRMV LAGVVCPYGH RCHFRHALTE QEKAMSQPKP RSMKLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22274340470Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.144671e-178glandular trichome| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g109320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-109AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470126.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F55e-84C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A072VQ630.0A0A072VQ63_MEDTR; Putative transcription factor C3H family
STRINGXP_004497020.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-84C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]