PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g097300.1 | ||||||||
Common Name | MTR_1g097300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 572aa MW: 64727.8 Da PI: 4.3329 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPtdeelv++yLk+k+ gkkl++ +vike+d+yk++P+dLp + +k+++++w+fF++rd+ky++g r++rat++gyWkatgkd++v+ Medtr1g097300.1 20 MPGFRFHPTDEELVMYYLKRKICGKKLKF-NVIKETDVYKWDPEDLPeQsFLKTGDRQWFFFCHRDRKYPNGGRSSRATRHGYWKATGKDRNVI 112 69**************************9.99**************95356788999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kktLvfy grap+ge+tdWvmhey++ Medtr1g097300.1 113 Y-NSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTM 146 *.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-58 | 15 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.769 | 19 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 21 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MGAVSESASA DCFSEVMSSM PGFRFHPTDE ELVMYYLKRK ICGKKLKFNV IKETDVYKWD 60 PEDLPEQSFL KTGDRQWFFF CHRDRKYPNG GRSSRATRHG YWKATGKDRN VIYNSRSVGV 120 KKTLVFYLGR APSGERTDWV MHEYTMDEDE LRTCRDVKDY YALYKVFKKS GPGPKNGEQY 180 GAPFKEEEWA DDDVVDFNVN SVDREVPEAA IDNVIDQHQL QPLFDDEIDE IIKGMLDVEP 240 VLDQQHVNGY VDFPQVDDEE TRNVVMDQFY EAMVFPDPSE KQQSSSQLYD AQPSFDFNHQ 300 SVDSHLCISE APEVTSTPNI QSGEGLVFYE EGFLEINDLI DTESTFSNTD KLNNDLIENL 360 QFEDVLSEFD PYQDAEMFLC GLGSINEETV SHAYMNNAGS NIENQSYQLL SNPEDVNQTV 420 DEFWMHVERN TRSPAEGYDG SFSLTNPGVV CDSVGFPTES TENQRSTVED VKTSRLSSAL 480 WAFVDSIPTT PASAAENPLV NRALNRMSSF SRVKIKPTDN NIAAGNNDTA TMKRAGRKGV 540 SFLFFPILIA LCAFLWVSIG NLRLLGRCVS P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-48 | 21 | 146 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.14297 | 0.0 | flower| glandular trichome| leaf| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g097300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469571.1 | 0.0 | NAC domain-containing protein 17 | ||||
TrEMBL | A0A072VNK6 | 0.0 | A0A072VNK6_MEDTR; NAC transcription factor-like protein | ||||
STRING | XP_004496404.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-134 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g097300.1 |
Entrez Gene | 25485018 |
Publications ? help Back to Top | |||
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