PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g094115.2 | ||||||||
Common Name | MTR_1g094115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 540aa MW: 59872 Da PI: 9.3097 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Medtr1g094115.2 76 FICEVCNKGFQREQNLQLHRRGH 98 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Medtr1g094115.2 152 WKCEKCSKKYAVQSDWKAHSKTC 174 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.9E-6 | 75 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.16E-7 | 75 | 98 | No hit | No description |
Pfam | PF12171 | 2.6E-5 | 76 | 98 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 117 | 147 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 140 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.16E-7 | 147 | 172 | No hit | No description |
SMART | SM00355 | 140 | 152 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MAAASSSTSF FGIREENQSQ ITHHHPHPQS TTTSATSSAP STTVPQKKRR NQPGTPNPDA 60 EVIALSPKTL MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EPRRKVYLCP 120 EPTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSRR DSFITHRAFC DALAQESVLR HHNPFGSTHQ LYATNHHISL GQISHQLQNH 240 QNQITSSTSN NNNLLRLGSA PPKFEQNLIS SPPLNHSSSF GHSIPSSSPF FNMSDISNQS 300 FEEQQSQQGQ FLNKQLHGLM HLPDLQGNTN TNNSNSSNLF NLMVHDQFNN MSSTQGTTLY 360 INNNSSLSDH QVGFVNSMQH GQNMSSPHMS ATALLQKASQ IGSTNSTNNN KGSNNDHKSG 420 DRDFVVSDHN NINATFGNRS SSIENDHDNN DLHGLINSIA NGNTSSIFGN ESNLNMRFGG 480 SDKLTLDFLG VGGMVRNMSG GFSQSEQQRD MMNTSMVSLN HDLKSAHSSQ HFGSSNILQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-33 | 148 | 206 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 3e-33 | 148 | 206 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22666 | 0.0 | leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g094115.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT149530 | 0.0 | BT149530.1 Medicago truncatula clone JCVI-FLMt-13F5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469433.1 | 0.0 | protein indeterminate-domain 4, chloroplastic isoform X1 | ||||
Refseq | XP_024640939.1 | 0.0 | protein indeterminate-domain 4, chloroplastic isoform X1 | ||||
Swissprot | Q8GYC1 | 1e-131 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A072VPA1 | 0.0 | A0A072VPA1_MEDTR; C2H2 zinc finger protein, putative | ||||
STRING | XP_004496222.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-101 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g094115.2 |
Entrez Gene | 25484913 |
Publications ? help Back to Top | |||
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