PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g082480.1
Common NameMTR_1g082480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 338aa    MW: 38411.1 Da    PI: 6.7921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g082480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13134185155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  Medtr1g082480.1 134 QRMTHIAVERNRRKQMNEYLSILRSLMPDS---HIQRGDQASIIGGAINFVKELE 185
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-12132187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.78E-12132187No hitNo description
SuperFamilySSF474593.4E-15133198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-7139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCLPEEERDR VKDMALEAVV YPQTQDPFSY GIKDFYNFNF NTLVAKEQEQ EHRSFSFVEN  60
QTENNCPPYV DWNNNNSSTF SPPHLNEVQE TTTDPSSNTN NTQNFHASPS VNTVIRPKRR  120
RARSRKNKEE IENQRMTHIA VERNRRKQMN EYLSILRSLM PDSHIQRGDQ ASIIGGAINF  180
VKELEHKFHF LGAKKERVVK SDEAGGSNNM PFSEFFTFPQ YSTSGSVCDN SNSVATIGEK  240
VGEIQSCIAD IEVTMVENHA NLKIRSRKRP KQLLKIVSGL QNMRLTILHL NVTTIGEIVL  300
YSLSVKVEDD CKLGSVDDIA SAVYQTVTRI QQEAMLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134145RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.8470.0glandular trichome| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g082480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1409600.0BT140960.1 Medicago truncatula clone JCVI-FLMt-14D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591068.20.0transcription factor bHLH94
SwissprotQ9C7T44e-79BH096_ARATH; Transcription factor bHLH96
TrEMBLG7I7I30.0G7I7I3_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES613190.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.15e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]