PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g062780.1

Common Name

MTR_1g062780

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

C2H2

Protein Properties

Length: 298aa MW: 33325.1 Da PI: 8.4937

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g062780.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Medtr1g062780.1 120 YECKTCNRCFPSFQALGGHRASH 142 99**********99999998887 PP
2	zf-C2H2	13.7	0.00018	199	221	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Medtr1g062780.1 199 HECSICGAEFSSGQALGGHMRRH 221 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.61E-5	119	150	No hit	No description
PROSITE profile	PS50157	10.388	120	147	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	120	142	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.1E-10	120	144	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.16E-6	196	223	No hit	No description
Gene3D	G3DSA:3.30.160.60	0.001	197	221	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	8.7E-13	198	222	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	199	221	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	199	221	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	201	221	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MQVLEDQVLM VSKDHTQQII KGKRTKRQRL PSPLRLTMPV SNSCNEGTSY DNNNNNSGGI 60 EFVKIDSRDR SEEEKEEEED LANCLILLAR GHNHRHDYQN THVSNHRDHN NNKSSNFYLY 120 ECKTCNRCFP SFQALGGHRA SHTKPNKANC NVAQQKQAVT TSSFVDDHYD PTMNTILSLQ 180 AFAATPITTI PTTKKSKVHE CSICGAEFSS GQALGGHMRR HRNLVNTSTT TTTTTTSMSL 240 SIGSPKSHEA KKPRNGFKLD LNLPAPEVDQ KDQSKFSFQP RENVIAFSNS SLVDCHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g062780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013468116.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A072VL43	0.0	A0A072VL43_MEDTR; C2H2-type zinc finger protein
STRING	XP_004515927.1	1e-114	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	1e-50	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Medtr1g062780.1
Entrez Gene	25483939

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]