PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g021440.1 | ||||||||
Common Name | MTR_1g021440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 400aa MW: 44907.6 Da PI: 8.0701 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.6 | 1.5e-20 | 29 | 112 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ ++l lpk+f ++ + k+ + +tl+ +sg +W++ l + +++++++ +GW++Fvk++ Lke+Df+vFk++g+s f v +f+ Medtr1g021440.1 29 TTDFQ-QQLALPKTFSDNLK--KKLPENVTLKGPSGAVWDIGL--TTRDNTVYFVGGWERFVKDHSLKENDFLVFKYNGESLF--EVLIFD 112 44444.46*******85555..558889***************..99999***************************998888..777776 PP | |||||||
2 | B3 | 50.3 | 4.4e-16 | 281 | 373 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ ++ +v ++l +p +f +h ++++++++l++++g++W+ + ++ +++l +GW +Fv+an++k gD++vF+l+++ e + Medtr1g021440.1 281 FVKIIKTFNVDGPRILNVPHQFSIAHL--PNGKIKIILRNLKGEQWTANSVPrSRVHTSHTLCGGWMSFVRANNIKLGDVCVFELINDCEL--R 370 778888888999999*******99994..346789**************94333333449999**********************997666..4 PP EEE CS B3 94 vkv 96 v+v Medtr1g021440.1 371 VRV 373 444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.43E-24 | 18 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.227 | 21 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-25 | 22 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.95E-22 | 22 | 112 | No hit | No description |
SMART | SM01019 | 1.7E-20 | 23 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-17 | 28 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 272 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-22 | 274 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.15E-19 | 279 | 373 | No hit | No description |
SMART | SM01019 | 6.7E-13 | 281 | 377 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-13 | 281 | 372 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 281 | 377 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEVDGSRSWE EDIYWNNFQF IHFTQFLQTT DFQQQLALPK TFSDNLKKKL PENVTLKGPS 60 GAVWDIGLTT RDNTVYFVGG WERFVKDHSL KENDFLVFKY NGESLFEVLI FDGDNFCEKA 120 TSYFVRKCGH AQTEEGGSKV KNTNTSVEEV NTASNGGVDC GSPETFRVRR LDSIRTPLAV 180 PVKTTDKMTL NAFFESASPK ELPVYFPKQP TGQRTKKPAN EVTPGQTKKR GRPPKEGNSR 240 EGALDLRASN KEHSEAAQSR LSSAKDEKKL AQSFTSTFPY FVKIIKTFNV DGPRILNVPH 300 QFSIAHLPNG KIKIILRNLK GEQWTANSVP RSRVHTSHTL CGGWMSFVRA NNIKLGDVCV 360 FELINDCELR VRVAEVDEDG LVSEVQKEGI DHQNGSCET* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12651 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g021440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157978 | 0.0 | AC157978.25 Medicago truncatula clone mth2-47l16, complete sequence. | |||
GenBank | AC202488 | 0.0 | AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589279.1 | 0.0 | B3 domain-containing protein REM16 isoform X1 | ||||
TrEMBL | G7I578 | 0.0 | G7I578_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES59530 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-41 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g021440.1 |
Entrez Gene | 11417208 |
Publications ? help Back to Top | |||
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