PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021435.1
Common NameMTR_1g021435
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 373aa    MW: 41832.4 Da    PI: 8.8051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021435.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-1824112498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++s ++ +++  lpk+f ++ +  k+ +  +tl+ +sg +W++ l  +  ++++++t+GW++Fv+++ Lke Df+ Fk++g+s f   v +f
  Medtr1g021435.1  24 LFLHSTTNFQQQPALPKTFSDNLK--KKLPENVTLKGPSGVVWNIGL--TTIDDTVYFTNGWQQFVNDHSLKESDFLFFKYNGESLF--EVLIF 111
                      55677777788899*****85555..558889***************..********************************998888..77777 PP

                      - CS
               B3  98 r 98 
                      +
  Medtr1g021435.1 112 D 112
                      6 PP
2B3444.1e-14249346188
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..............EEETTE...EEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy............rkksgr...yvltkGWkeFvkangLkegDf 79 
                      f+k++++ d + s+ + +p +f ++h     +++++tl++++g+ W+v+ i                 +r   +++ +GW  Fv++n++k gD+
  Medtr1g021435.1 249 FVKIFKTGDINVSRTMKIPYHFSAAHLP--DCKTEVTLRNSRGECWTVNSIPyakgktvqtnpyA---KRrpvHTFCGGWVAFVRDNNIKFGDT 337
                      88999999999999*********99963..48899*************99655666666663322...224457777***************** PP

                      EEEEE-SSS CS
               B3  80 vvFkldgrs 88 
                      ++F+l+++ 
  Medtr1g021435.1 338 CIFELVSDY 346
                      ****98753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-2118112IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-1521114IPR003340B3 DNA binding domain
PROSITE profilePS5086314.98821114IPR003340B3 DNA binding domain
CDDcd100172.76E-1822112No hitNo description
PfamPF023622.4E-1523112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-2127112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-21240353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-22242354IPR015300DNA-binding pseudobarrel domain
CDDcd100173.96E-17247352No hitNo description
SMARTSM010194.7E-11249358IPR003340B3 DNA binding domain
PfamPF023624.1E-12249345IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956249356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAGSNKSWEE EIYWNHFQFI HFTLFLHSTT NFQQQPALPK TFSDNLKKKL PENVTLKGPS  60
GVVWNIGLTT IDDTVYFTNG WQQFVNDHSL KESDFLFFKY NGESLFEVLI FDGRSFCEKA  120
ASYFVGKCGH AQTEQGGIKA KDTNKSVEEI DTAFDAGVES ASPEQLMADA VTKTTPVAAP  180
SQSIGKRIKR PVNKFTIVLG LPKAATSHKR AHDLVACNKE HSEASIVRRS WKEDEKKTAQ  240
SFTSSFPYFV KIFKTGDINV SRTMKIPYHF SAAHLPDCKT EVTLRNSRGE CWTVNSIPYA  300
KGKTVQTNPY AKRRPVHTFC GGWVAFVRDN NIKFGDTCIF ELVSDYVMQV HISGVGKEGL  360
DQQNGHVKLN SM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.142820.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579780.0AC157978.25 Medicago truncatula clone mth2-47l16, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466025.10.0B3 domain-containing protein REM16
TrEMBLA0A072VDG50.0A0A072VDG5_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-49B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]