PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021380.1
Common NameMTR_1g021380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 351aa    MW: 39566.7 Da    PI: 7.2699
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-1924111498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++++s  ++++ l lp++f ++ +  k+ +  +tl+ +sg +W+v l  + +++++++ +GW +F++++ Lke+Df vFk++g+s f  +v +f
  Medtr1g021380.1  24 QFLHSTDFEQQ-LALPRTFSDNLK--KKLPENVTLKGPSGVEWNVGL--QTRDNTVYFVDGWHQFARDHSLKENDFAVFKYNGESLF--NVLIF 110
                      55566777765.*******85555..558889***************..9999****************************998888..88887 PP

                      - CS
               B3  98 r 98 
                      +
  Medtr1g021380.1 111 Q 111
                      6 PP
2B341.72.1e-132493271195
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      + s+ l++p +f ++h     +++++tl++ +g+ W+v+      + ++++ +GW  Fv++ng++ gD+++F+l++  +f ++v 
  Medtr1g021380.1 249 SGSRTLRIPCHFSATHLP--DCKTEVTLRNARGECWNVNS--IPVGATHTFCGGWMAFVRDNGINLGDTIIFELVS--NFVMKVY 327
                      556789*******99963..48899***************..88888999***********************875..6655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-2218111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.88920113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-2421111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1821110No hitNo description
SMARTSM010191.3E-1622113IPR003340B3 DNA binding domain
PfamPF023621.8E-1624111IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-24232330IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-22233329IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-17237328No hitNo description
SMARTSM010191.6E-12238332IPR003340B3 DNA binding domain
PfamPF023621.2E-10239327IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985239332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEDSSRSLEE NIYWNHFQFI HFAQFLHSTD FEQQLALPRT FSDNLKKKLP ENVTLKGPSG  60
VEWNVGLQTR DNTVYFVDGW HQFARDHSLK ENDFAVFKYN GESLFNVLIF QGESFCEKAA  120
SYFVGLREKE TNKSVEEVNT VLNAGVESAS PEQFTANAVT IVLPSQSTGK RTKQPVNEVT  180
PVQTKKRGRP PKKANCSLER EVHDYDLVAC NKEHSEASIS GKEDEKKIAH LFTSSFPYFV  240
MIMKSCNISG SRTLRIPCHF SATHLPDCKT EVTLRNARGE CWNVNSIPVG ATHTFCGGWM  300
AFVRDNGINL GDTIIFELVS NFVMKVYISG VGKEGLDYQN YKRAQKCACL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579780.0AC157978.25 Medicago truncatula clone mth2-47l16, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589275.10.0B3 domain-containing protein REM16
TrEMBLG7I4K90.0G7I4K9_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-42B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]