PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g021360.1 | ||||||||
Common Name | MTR_1g021360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 479aa MW: 54490.6 Da PI: 9.1049 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.9e-19 | 27 | 113 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++++ +l+++ l lpk+f ++ ++k + +tl+ +sg +W++ l + ++++++ t+GW++Fvk++ Lk++Df+vFk++g+s f v + Medtr1g021360.1 27 TQFLQPTHLEQQ-LALPKTFSDNLKNK--LPANVTLKGPSGVVWDIGL--TTRDDTIYSTDGWQQFVKDHSLKQNDFLVFKYNGESLF--EVLI 113 556677777775.*******9555544..8899***************..9*******************************998888..5555 PP | |||||||
2 | B3 | 58.3 | 1.4e-18 | 193 | 272 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++l lpk+f ++ + k+ + +tl+ +sg +W++ l + +++ +++ +GWk+F k++ Lk++Df+vFk++g+s f v +f+ Medtr1g021360.1 193 EQQLALPKTFSDNLK--KKLPENVTLKGPSGVVWNIGL--TTRDDIVYFVDGWKRFIKDHSLKQNDFLVFKYNGKSLF--EVLIFD 272 4579******85555..558889***************..999999**************************998877..777776 PP | |||||||
3 | B3 | 49.2 | 9.3e-16 | 374 | 465 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k ++ +v ++l +p +f ++h ++++++++l +++g++W+v+ ++ ++l +GW +Fv+ n++k+gD+++F+l+++ e + Medtr1g021360.1 374 FVKMIKTFNVDGPRILNVPHQFSKAHL--PNRKIKIILHNLKGEQWTVNSVPtTRVNTDHTLCGGWVNFVRGNNIKVGDVCIFELIHECEL--R 463 5666667778888899*******9995..347789**************955444445599999*********************996655..4 PP EE CS B3 94 vk 95 v+ Medtr1g021360.1 464 VR 465 44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.02E-22 | 22 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.381 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.16E-17 | 25 | 114 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-22 | 26 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.1E-18 | 26 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-16 | 27 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-22 | 180 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.495 | 181 | 274 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-22 | 183 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.63E-18 | 183 | 272 | No hit | No description |
SMART | SM01019 | 2.7E-17 | 184 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-15 | 193 | 272 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-21 | 366 | 466 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-21 | 367 | 466 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-16 | 372 | 466 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 374 | 470 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-11 | 374 | 470 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-12 | 375 | 465 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MGGTQNSSSR SWEEDIYWTH FQFIRFTQFL QPTHLEQQLA LPKTFSDNLK NKLPANVTLK 60 GPSGVVWDIG LTTRDDTIYS TDGWQQFVKD HSLKQNDFLV FKYNGESLFE VLIFHGESFC 120 EKAASYFILE RGQAHTGQRG RKAKDTNTSV EEVNTPSNGS VECGLPEKSW EEDIYWTHFQ 180 FIHFTQFLRA DFEQQLALPK TFSDNLKKKL PENVTLKGPS GVVWNIGLTT RDDIVYFVDG 240 WKRFIKDHSL KQNDFLVFKY NGKSLFEVLI FDGDSFCEKA ASYFVGKCGN AQIEQGGRKA 300 KDTNKSVSPE QFLADAVPSQ TNGKRTKKRP VNEVTPLQTK RGRRPKAEAA LSKLSSSHAE 360 KKIAESFTSS FPYFVKMIKT FNVDGPRILN VPHQFSKAHL PNRKIKIILH NLKGEQWTVN 420 SVPTTRVNTD HTLCGGWVNF VRGNNIKVGD VCIFELIHEC ELRVRVAEVG KDDSRLEN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22420 | 0.0 | flower| leaf| root| seed| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g021360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148404 | 0.0 | AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence. | |||
GenBank | AC202488 | 0.0 | AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589274.2 | 0.0 | B3 domain-containing protein REM16 | ||||
TrEMBL | G7I4K8 | 0.0 | G7I4K8_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES59525 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-47 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g021360.1 |
Entrez Gene | 11422470 |
Publications ? help Back to Top | |||
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