PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g021330.1 | ||||||||
Common Name | MTR_1g021330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 386aa MW: 43382.4 Da PI: 8.5511 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.4 | 4.3e-21 | 27 | 115 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++++s + +++l lpk f ++ + k+ + +tl+ +sg +W++ l + +++++++ +GW++Fvk++ Lke+Df+vFk++g+s f v + Medtr1g021330.1 27 TIFLQSTTDFQQQLALPKIFSDNLK--KKLPENVTLKGPSGVVWNIGL--NTRGESVYFVDGWRRFVKDHSLKENDFLVFKYNGESLF--EVLI 114 677889999999********85555..558889***************..99999***************************998888..6666 PP E CS B3 97 f 97 f Medtr1g021330.1 115 F 115 6 PP | |||||||
2 | B3 | 54 | 3.1e-17 | 264 | 355 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ ++ +v+ s+ + +p++f eh +k + ++++l + +g+ W v+ k +++++l +GW +Fv+an++k gD+++F+l+++ e + Medtr1g021330.1 264 FVKIIKTFHVSGSCVMNIPRQFSMEHLKK--GRIKIILHNMKGECWIVNSVPtAKVPKSHTLCAGWMSFVHANNIKIGDVCIFELINDCEL--R 353 88999999**************9999544..6789*************99556899999**************************997666..4 PP EE CS B3 94 vk 95 v+ Medtr1g021330.1 354 VR 355 44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-22 | 21 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.7E-19 | 25 | 118 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.947 | 25 | 118 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.57E-20 | 26 | 116 | No hit | No description |
Pfam | PF02362 | 1.1E-18 | 26 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-23 | 29 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-22 | 255 | 357 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-23 | 259 | 357 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.41E-18 | 262 | 356 | No hit | No description |
SMART | SM01019 | 4.4E-13 | 264 | 360 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-14 | 264 | 355 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 264 | 360 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MGEGRTQNSK SWEEEIYWSH FQFIHFTIFL QSTTDFQQQL ALPKIFSDNL KKKLPENVTL 60 KGPSGVVWNI GLNTRGESVY FVDGWRRFVK DHSLKENDFL VFKYNGESLF EVLIFNGESF 120 CEKAASYFVL ECGQAHAEQG GNKGKNSNKS VEEVNTTNGS VECASPEKFR SLDSIRTPLA 180 LTFETTNGKT FNAGFKSASP EKPVIEVTPV QTKKRARTPK EANSWESACN KEHSEAALSK 240 LSRKLSRNDE EKIVQSFSSS VPYFVKIIKT FHVSGSCVMN IPRQFSMEHL KKGRIKIILH 300 NMKGECWIVN SVPTAKVPKS HTLCAGWMSF VHANNIKIGD VCIFELINDC ELRVRIAGVG 360 KEGLDCQVGK EGLDHQNEHM KLNSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g021330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148404 | 0.0 | AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence. | |||
GenBank | AC202488 | 0.0 | AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589271.2 | 0.0 | B3 domain-containing protein REM16 | ||||
TrEMBL | G7I4K5 | 0.0 | G7I4K5_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | AES59522 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-52 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g021330.1 |
Entrez Gene | 11420399 |
Publications ? help Back to Top | |||
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