PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g013790.1
Common NameMTR_1g013790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 256aa    MW: 29082 Da    PI: 7.9271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g013790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27101158258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      +Dgy+WrKYGqK+ k++  pr+Y+rC++a +Cp+kkkv+++ +d ++++ tY geH h
  Medtr1g013790.1 101 KDGYQWRKYGQKVTKDNASPRAYFRCSMApSCPAKKKVQKCIHDRSILVATYDGEHSH 158
                      8***************************99***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-2891161IPR003657WRKY domain
PROSITE profilePS5081124.71995161IPR003657WRKY domain
SuperFamilySSF1182901.83E-2496161IPR003657WRKY domain
SMARTSM007749.3E-30100160IPR003657WRKY domain
PfamPF031061.7E-22101158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAIRMDEKVE TLELELQQVR EENNTLRFML EVMSIKCTKL ESHLQDIKKE EHRGIISSNH  60
QIESIPNIDS SKRARLEFPT AQKPLQVFVR TQPNDESLII KDGYQWRKYG QKVTKDNASP  120
RAYFRCSMAP SCPAKKKVQK CIHDRSILVA TYDGEHSHGV PNESFKPSSS TPKGSSISNK  180
LPTRLSDKEA ISTRICENVM QQFGVERHIK IEEYASSLIK DPDFTAALAE AVARTITDQE  240
HKRQGLDLNL NLSEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-19991611374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g013790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286600.0AC128660.31 Medicago truncatula clone mth2-14p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588831.10.0probable WRKY transcription factor 40
TrEMBLG7I7N00.0G7I7N0_MEDTR; Putative transcription factor WRKY family
STRINGAES590820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-42WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]