PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0100s0160.1
Common NameMTR_0100s0160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 288aa    MW: 31753.9 Da    PI: 8.4941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0100s0160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016222244223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +Cp Cg  Fs+  +L +H ++ H
  Medtr0100s0160.1 222 QCPQCGAKFSSITTLINHVQKvH 244
                       7******************9988 PP
2zf-C2H216.81.9e-05260281323
                       ETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                       Cp+C+k F+++ +L+ H  + H
  Medtr0100s0160.1 260 CPKCSKGFTDPVSLVEHVEReH 281
                       *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.02E-11459No hitNo description
Gene3DG3DSA:4.10.1110.101.6E-91053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.3931056IPR000058Zinc finger, AN1-type
SMARTSM001540.0841352IPR000058Zinc finger, AN1-type
PfamPF014285.3E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.1E-1091158IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.91E-993146No hitNo description
PROSITE profilePS510397.62498145IPR000058Zinc finger, AN1-type
SMARTSM001540.17101142IPR000058Zinc finger, AN1-type
PfamPF014281.4E-7101141IPR000058Zinc finger, AN1-type
SMARTSM003550.0077221244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64221249IPR007087Zinc finger, C2H2
PfamPF138949.9E-5222244No hitNo description
SuperFamilySSF576671.09E-5222277No hitNo description
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
SMARTSM003555.5258281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245258286IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGTPEFPDLG KHCADSDCKL VDFLPFTCDR CYQVYCLEHR SYIKHRCTKA DKQDVTVVIC  60
PLCAKGVRLV PEQDPNITWE NHVNTDCDPS NYEKVTKKKK CPAAGCKEIL VFSNTIKCKD  120
CTIDHCLKHR FGPDHKCPGP KKVETNFPFM NLMNRSRKKE SKTNSSSTSS SSKWTTSFLN  180
AASNIRASAE AGMSKLSGEI NQAWGTSSDG GRKSNDNGQV EQCPQCGAKF SSITTLINHV  240
QKVHERSGSR SAANVTIDAC PKCSKGFTDP VSLVEHVERE HGGTSRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.195600.0glandular trichome| root
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0100s0160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525700.0BT052570.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-B-14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442728.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-128SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLB7FKF10.0B7FKF1_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004513765.11e-177(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]