PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0011s0122.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 923aa    MW: 99152 Da    PI: 5.158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0011s0122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00062193215123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+++Fs+   L  H+r H
  Mapoly0011s0122.1.p 193 HTCKVCKRPFSSGRALGGHMRAH 215
                          79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.09E-5189220No hitNo description
PfamPF139124.1E-7192215IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.699193220IPR007087Zinc finger, C2H2
SMARTSM003550.11193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411363390IPR007087Zinc finger, C2H2
SMARTSM003550.084363385IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-4364387IPR007087Zinc finger, C2H2
PROSITE patternPS000280365385IPR007087Zinc finger, C2H2
SMARTSM003550.25430454IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280432454IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-4432454IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0025437456IPR007087Zinc finger, C2H2
PfamPF139120.015745755IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MVGCHEQEAP SETTASSSSF ERELVTGSSC VIDADANYSE MAVSDTAAGL TAPTARQRVS  60
DEGKKPGPSS QHRPSPDRNY SQAVSENLQA VTSSSSEHRG ISRIVQQQQP GQPFHRRHTT  120
GATSPAMGTA EAAAVAAAAS SSSAEEAALD VDCVEGHDEG LHSGREIPRC GLDNLDSSPD  180
CGRHDASQGN SRHTCKVCKR PFSSGRALGG HMRAHGNGDP GTSSNADRKS EKQLISSSPR  240
TQQASLHACN GVAENGIEHP GADGVARAQS LSPESRARAR TREIQVRRAV GARRSKTNGK  300
RRGSTTPKSS VEDAAALTKQ QPHDEDDNAA SRRQAERSST SCSDNNSDGA HDDGAATDDA  360
AGNICDVCRE EFENEKQLNT HKKSHKPEYN LRECPRKSRR FIDQDYTEVA PPTIPTKKPP  420
APQEKQQSDS GCPYPGCTKK FHSSKALFGH MRCHPDRTWR GIHPPDENGA STSAAGERQH  480
RRKKSRPNSH VPARVVSDSE SEPEQKQSGK SASTEHESDT DSIEAAYIQG QEAHTNGDRQ  540
QSSTPGWWAS GVTGKRSKRS RQTVRSLQAV HHGASTSSAA APDNALEELN ETAMVMMMLA  600
SNPSGAPKHE DPDEHMEDLF RNPNSADECP KDEPTEGCLE AALRAKDEEE DEEDEEEDKE  660
EEGEDGDEKQ GAAAATAAEV VEDLEQGPEL VPKDEFMTAA AETAEVPMEV DEEPEASLSE  720
DGVLQGEEAV QLEAGQQEAS SSKHGQALGG HKRCHFDPTK KDAEKEGSSS NNGGKNPRSS  780
NPAGRASYSQ SRGRHESSDA RGHSPRAKSD PGLQQQQQQQ AAAPAESRST GLLRPIEIDL  840
NKPPTVTYDE EMEMAPSPAS AKFSVENHEA QASASAEASS SPDDGEPMRN QPRDYQLILH  900
LSPITLNLED QLHAYYKRVT PA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6XK650.0A0A2R6XK65_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-10C2H2-like zinc finger protein