PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G125700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 268aa    MW: 30424.5 Da    PI: 6.6834
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G125700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20116166155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +grW+AeIrdp   ++rkr++lg+f+taeeAa  +++a+ kl+g
  Manes.18G125700.1.p 116 KKFRGVRQRP-WGRWAAEIRDP---NRRKRVWLGTFDTAEEAATVYDRAAVKLKG 166
                          59********.**********8...335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.9E-6213263IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.33E-34116175No hitNo description
PROSITE profilePS5103224.276117174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31117175IPR001471AP2/ERF domain
SMARTSM003801.4E-37117180IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22117175IPR016177DNA-binding domain
PfamPF008471.8E-13117166IPR001471AP2/ERF domain
PRINTSPR003671.4E-10118129IPR001471AP2/ERF domain
PRINTSPR003671.4E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTEPMLISEP LHMSLQPVIK FTEHVTTTSK LIPFCSRTRK RLVRIILTDP YATDSSSDDE  60
EREENKEPRK GKKFVKRVKR HVEEINFEQI RPSGLPPTIS RRRVSRSLKS DVSCRKKFRG  120
VRQRPWGRWA AEIRDPNRRK RVWLGTFDTA EEAATVYDRA AVKLKGANAV TNFPNPAMTE  180
DILDSQRDGC ESCDSPSAVT SSPTSVLRYE ELKPFDESFS YGDVDAFGFE IDVPLHLADF  240
MLSGKHLAGE EFVDLDDFLV DVISEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21116174463ATERF1
3gcc_A2e-21116174463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G125700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601937.10.0pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046825e-57PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2C9U3070.0A0A2C9U307_MANES; Uncharacterized protein
STRINGcassava4.1_033707m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-31cytokinin response factor 1