PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G025700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 362aa MW: 41772 Da PI: 6.4545 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.9 | 2.2e-19 | 31 | 114 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ ++l +p +f+++ k+ ++ +tl+ +sgr+W+v l + +++++++ GW+eFv+++ L+e+D ++Fk++g+s+f v +f+ Manes.18G025700.1.p 31 HSGFDRQLAIPEHFTKNLR--KKLPQVITLRGPSGRTWQVIL--TTNDDTVFFNHGWEEFVNDHVLQEKDLLIFKYNGDSCF--DVLMFD 114 4455667*******96655..448889***************..***********************************999..776665 PP | |||||||
2 | B3 | 46.4 | 7.2e-15 | 259 | 339 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f v++p +v ++ +++p +++h ++ e+++++l++ + ++W k+ y+k++++ l++GWk+F+ +n+L+e D++vF+ Manes.18G025700.1.p 259 FMVVMKPTHVYRRFYMSIPSAWTTKHlrSL---EKQDVILRT-KENTWHTKFYYQKSKNSGGLSSGWKSFALSNDLQEFDVCVFE 339 77899*********************6433...334688776.899******9999999999**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-22 | 22 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.552 | 23 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-22 | 25 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-20 | 25 | 114 | No hit | No description |
SMART | SM01019 | 9.3E-17 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-17 | 31 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-16 | 259 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.3E-5 | 259 | 353 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 259 | 339 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.62E-20 | 259 | 356 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-15 | 259 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.152 | 259 | 358 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGEEACRDCR SWEEKIYWTH FQCLHFLQVL HSGFDRQLAI PEHFTKNLRK KLPQVITLRG 60 PSGRTWQVIL TTNDDTVFFN HGWEEFVNDH VLQEKDLLIF KYNGDSCFDV LMFDGQSLCE 120 KAGSYFVRKC GHRENDSGGQ TKRRTGENSF EATLPCPEDY IGGSPLEKSA NNDIDTTPLG 180 QHNTYRYVTK KIRREIEFNP IHEEPSTSAE EIETKPDIEH ISPSVVHSVP YLSSRRLITE 240 EEKQNALQLA QAVLTRDGFM VVMKPTHVYR RFYMSIPSAW TTKHLRSLEK QDVILRTKEN 300 TWHTKFYYQK SKNSGGLSSG WKSFALSNDL QEFDVCVFEP GIPVDNAVVL DVNIIRVFHD 360 D* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G025700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601809.1 | 0.0 | B3 domain-containing protein REM16 | ||||
Refseq | XP_021601810.1 | 0.0 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A2C9U1J1 | 0.0 | A0A2C9U1J1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010400m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-81 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G025700.1.p |