PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G025400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 326aa MW: 37773.5 Da PI: 9.3879 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.4e-19 | 34 | 110 | 12 | 94 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++l +p +f+++ k + t+tl+++sg +We+ l + ++++ +++ GWkeFvk + L+e+D++vFk++g+s f v Manes.18G025400.1.p 34 FDQCLAIPENFTRNLPRK--LPNTVTLKSPSGIKWEIGL--TANDNSLFFEHGWKEFVKYHSLEENDILVFKYNGESHF--DV 110 45669*******777544..888****************..********************************998888..44 PP | |||||||
2 | B3 | 47.7 | 2.8e-15 | 224 | 318 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE...E- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk...ld 85 f+ ++p +v+++ +++p +++h + +e+++++l+ + ++W+ +l yr+k++r + +GW++Fv +n+L+e D++vF+ l Manes.18G025400.1.p 224 FIVMMKPTHVSRKFFMSIPSAWMTKHiS--CRENQDVILRM-KENTWRTRLYYRRKPNRgGLACGGWRSFVLDNKLREFDVCVFEpgsL- 309 67789999******************63..33445677665.779******99999999655558********************4322. PP SSSEE..EE CS B3 86 grsefelvv 94 ++++ l v Manes.18G025400.1.p 310 DNESVVLDV 318 224444555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-21 | 21 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.397 | 23 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-15 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-21 | 26 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-19 | 31 | 114 | No hit | No description |
Pfam | PF02362 | 8.5E-17 | 34 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-18 | 222 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.38E-20 | 224 | 321 | No hit | No description |
SMART | SM01019 | 6.3E-10 | 224 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-13 | 224 | 320 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-14 | 224 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.335 | 224 | 324 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEEGASRDCR SWNEEIYWTH FQYVHFSRFL HAGFDQCLAI PENFTRNLPR KLPNTVTLKS 60 PSGIKWEIGL TANDNSLFFE HGWKEFVKYH SLEENDILVF KYNGESHFDV LMFNGWSMCE 120 KTACYFLRKH GPKEHDSGCQ IKREIGKKSA GVVIGSCPKK KPKNKNIHTP IKQPVISKFA 180 KNVTAGNKEP CDEDIEAKPD IKHREKEIQC VLQLAHATLT DKGFIVMMKP THVSRKFFMS 240 IPSAWMTKHI SCRENQDVIL RMKENTWRTR LYYRRKPNRG GLACGGWRSF VLDNKLREFD 300 VCVFEPGSLD NESVVLDVKI FHVKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G025400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600589.1 | 0.0 | B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A2C9TZZ9 | 0.0 | A0A2C9TZZ9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023093m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G025400.1.p |