PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G104200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 323aa    MW: 36692 Da    PI: 6.2515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G104200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-163077148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd l+ ++++ +G g+W+  a++ g++Rt+k+c++rw++yl
  Manes.14G104200.1.p 30 RGPWTLEEDTLITHYIACHGEGRWNMLAKHAGLKRTGKSCRLRWLNYL 77
                         89********************************************97 PP
2Myb_DNA-binding50.54.6e-1683126146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Manes.14G104200.1.p  83 RGNLTPQEQLLILELHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 126
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.212577IPR017930Myb domain
SuperFamilySSF466891.42E-2928124IPR009057Homeodomain-like
SMARTSM007173.3E-132979IPR001005SANT/Myb domain
PfamPF002491.2E-143077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-223184IPR009057Homeodomain-like
CDDcd001672.82E-103277No hitNo description
PROSITE profilePS5129425.43378132IPR017930Myb domain
SMARTSM007171.3E-1482130IPR001005SANT/Myb domain
PfamPF002494.8E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2385131IPR009057Homeodomain-like
CDDcd001674.09E-1187126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MHSIRPPVRA AASVTKRMCN STEEDSQLRR GPWTLEEDTL ITHYIACHGE GRWNMLAKHA  60
GLKRTGKSCR LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAQ QLPGRTDNEI  120
KNYWRTRVQR QARQLNIESN SKRFLDAVRC FWMPRLLQKV EQNCYSYSTL STMDSQTDAA  180
ASASSTNFTV DNSLSSESFP IQTKWANYSN LPSEHSNSVT SPSVLSTDSK PISPQTQTLE  240
NPASISPPVL DNTVYDNLIV GDCYYVENSG YDMDGLNTAS VPEIVAFGDS TSECQMAESN  300
WVFDNDMADT LWNMDDTWQF RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26271311104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G104200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347381e-57KM034738.1 Jatropha curcas clone JcMYB119 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592835.10.0transcription factor MYB62-like
SwissprotQ9C9G71e-90MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2C9UKL00.0A0A2C9UKL0_MANES; Uncharacterized protein
STRINGcassava4.1_022192m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-92myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]