PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G018600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 341aa    MW: 37884.2 Da    PI: 5.4057
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G018600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.8e-28122183159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK++ g+++pr+YYrCt +   gC ++k+v+ s+edp++++itY+g+H+++
  Manes.14G018600.1.p 122 LDDGFSWRKYGQKDILGAKYPRGYYRCTERivqGCLATKQVQLSNEDPTIFQITYRGRHTCT 183
                          59**************************99999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.125117180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-27119184IPR003657WRKY domain
SuperFamilySSF1182909.68E-25121184IPR003657WRKY domain
SMARTSM007749.1E-38122184IPR003657WRKY domain
PfamPF031062.2E-25123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MENMGDWEQK DLVNELMLGR ELARQLQIHL NVPSSSPETR ETLVHEIQAS YEKALSMLNP  60
TGSIAIGVSE SPPSLSGSPR TEDSERELKD HDLRHASRKR KGMPRWTRQV RVSPGIGLEG  120
PLDDGFSWRK YGQKDILGAK YPRGYYRCTE RIVQGCLATK QVQLSNEDPT IFQITYRGRH  180
TCTQAHMLSP SKPLQNQGPT NTVMEPQKPQ ENLQQQSQDL SSDFLSGLKV ITEVLDSSQQ  240
SVPPFYFPSA ASVKADNEAF SPYVVDKSFI ENSHFSLSSS GMHHYSFGGN RNFQTSAEAE  300
LTDIICAATS TTDSPTIGLD FPFANVEFDP NTFDNSGFLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-18122182868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G018600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276550.0KT827655.1 Manihot esculenta WRKY transcription factor 80 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634837.10.0probable WRKY transcription factor 41
TrEMBLA0A140H8T40.0A0A140H8T4_MANES; WRKY transcription factor 80
STRINGcassava4.1_032717m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-58WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]