PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G062100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 693aa    MW: 80204 Da    PI: 6.3001
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G062100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.55.3e-2471162190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                          ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+v+++++ HnH
  Manes.13G062100.1.p  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVIQWYVSQFSNVHNH 159
                          69********************8888.*******************************************98744558************ PP

                 FAR1  88 ela 90 
                          el 
  Manes.13G062100.1.p 160 ELL 162
                          *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-2271162IPR004330FAR1 DNA binding domain
PfamPF105513.3E-24294387IPR018289MULE transposase domain
PROSITE profilePS509669.631566601IPR007527Zinc finger, SWIM-type
PfamPF044348.4E-7571598IPR007527Zinc finger, SWIM-type
SMARTSM005755.3E-4576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MATKPSNNIW IRRQQCPCGD WKCYIKYEGD EQTSVSSHLV KNETSSISSS AEVVFTPYVG  60
QIFISDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVIQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTGK  240
RENDTFELLE ACKAMVERDA DFTYDYTTDE NEKVENIAWS YGDSVRAYTV YGDVVTFDTT  300
YRSITYGLLL GMWFGMDNHG KAILFGCVLL QDESSDSFAW ALQSFVRFMR GRHPQTIITD  360
IDSGLRDAIA RELENTKHII CKWHILSKLV SWFSLALGSQ FEDFKAQFDL LCQLESVEDF  420
EHQWNLLVAR YGLSSDKHIG LLFSYRGYWS VSYIKGYFLA RTMTAEFSQC LDVFLKRVLR  480
GQTCLQVFFE QVVLAANFGN QSKDGMQYMH IRTCMPIEEH ARSVLTPYAF NVFQREIILS  540
LQYGTQEMAD GSYLLRHYKK MDGECLVIWI PEEEQIHCSC KEFDQSGILC RHSLRVLALK  600
NYFQLPEKYL PLRWRREHSV LPMDDQNAQS NSDECAQAFH SLAETLLTES LVSKERFTYV  660
HRELTGLLDH VRTMPTTEDF SLNMANNNIS ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G062100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633248.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2C9UQG80.0A0A2C9UQG8_MANES; Uncharacterized protein
STRINGcassava4.1_002824m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]