PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G134300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 244aa    MW: 27912.1 Da    PI: 6.1571
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G134300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed ll++ v+++G ++W++Ia+  g++Rt+k+c++rw +yl
  Manes.11G134300.1.p 10 KGPWTEQEDILLINFVHLFGDRRWDSIAKVSGLNRTGKSCRLRWVNYL 57
                         79********************************************97 PP
2Myb_DNA-binding56.85.2e-1863108148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++
  Manes.11G134300.1.p  63 RGKMTPQEEKLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.157557IPR017930Myb domain
SuperFamilySSF466895.39E-308104IPR009057Homeodomain-like
SMARTSM007171.0E-16959IPR001005SANT/Myb domain
PfamPF002491.2E-171057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-221164IPR009057Homeodomain-like
CDDcd001678.14E-121257No hitNo description
PROSITE profilePS5129426.96858112IPR017930Myb domain
SMARTSM007175.2E-1762110IPR001005SANT/Myb domain
PfamPF002491.8E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2465111IPR009057Homeodomain-like
CDDcd001671.40E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKMVQNEIRK GPWTEQEDIL LINFVHLFGD RRWDSIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE EKLVLELHAK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRTMS  120
PSLSSFNSSS TSNITTQNSS PFPETAEASF YDTGGPESSS SGGQISEAEQ EGEKGYSMDD  180
IWKDIENSIE PAYDGFSEEG CNFSSFSIAS PSWEYCSDTL WRMDEEESKM FLPYECGTVF  240
LTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-28211219128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G134300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674165.11e-149transcription factor MYB59 isoform X1
SwissprotQ9LX823e-97MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2C9V0S90.0A0A2C9V0S9_MANES; Uncharacterized protein
STRINGcassava4.1_014911m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-95myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]