PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G052900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 264aa MW: 29194.6 Da PI: 9.3277 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.4e-08 | 51 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt lC f+ G+C+yG +C+FaHg Manes.11G052900.1.p 51 FKTQLCAKFRL-GYCSYGYKCSFAHG 75 69*********.*************8 PP | |||||||
2 | zf-CCCH | 22.2 | 2.4e-07 | 100 | 117 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f++r +C yGdrC+F H+ Manes.11G052900.1.p 100 FYSR-NECTYGDRCRFLHV 117 6666.9************6 PP | |||||||
3 | zf-CCCH | 37.3 | 4.6e-12 | 158 | 183 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+ + rtG C+yG +C+FaHg+ Manes.11G052900.1.p 158 KKRICNKWERTGSCPYGKTCCFAHGQ 183 889*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.5E-6 | 50 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.366 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-7 | 50 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-13 | 50 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-6 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-6 | 89 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.239 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-7 | 94 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 96 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.033 | 156 | 184 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-9 | 156 | 187 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 157 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-13 | 157 | 188 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 158 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MHHLRPRFPT ENKEYENLSQ DPMCNIPGTC EIAAPNPKMP VATSNAVTGS FKTQLCAKFR 60 LGYCSYGYKC SFAHGIGELR KRLVNVQGPV VNQSNICRMF YSRNECTYGD RCRFLHVSPD 120 NIKRDMGYCR ESSSLRIGTT GFSGGQRSGF ASSKLAMKKR ICNKWERTGS CPYGKTCCFA 180 HGQAELEKPI GDVELASGLA PTNTSKALPI SKSVVGTSYQ LQVQGMKCTF KKRAIQKISG 240 IYADWIEDMP LLHNSLNIAE KCS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G052900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627806.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like isoform X1 | ||||
TrEMBL | A0A2C9V0N4 | 0.0 | A0A2C9V0N4_MANES; Uncharacterized protein | ||||
STRING | POPTR_0003s06010.1 | 2e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18806 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-36 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G052900.1.p |