PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G020600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 315aa    MW: 35606.3 Da    PI: 6.7778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G020600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+ Ed++l+d+++ +G g W++ +++ g++R++k+c++rw++yl
  Manes.11G020600.1.p 14 RGAWTAMEDKILKDYIQIHGDGKWRSLPKKAGLKRCGKSCRLRWLNYL 61
                         89********************************************97 PP
2Myb_DNA-binding51.22.8e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
  Manes.11G020600.1.p  67 RGNITHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                          7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.748961IPR017930Myb domain
SuperFamilySSF466892.87E-2812108IPR009057Homeodomain-like
SMARTSM007172.8E-131363IPR001005SANT/Myb domain
PfamPF002494.8E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221568IPR009057Homeodomain-like
CDDcd001671.33E-91661No hitNo description
PROSITE profilePS5129423.94562116IPR017930Myb domain
SMARTSM007177.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2469116IPR009057Homeodomain-like
CDDcd001672.10E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRSPCCAKE GLNRGAWTAM EDKILKDYIQ IHGDGKWRSL PKKAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI THDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT IIGKKLQNQE  120
CSSSSRHDKQ IKFKQSQRRI KPTIQTSISI VNADAKKIFW TKASKCSKVV IPIKTGSQNP  180
VDDNTVVPPP SMPNISGDLH RYWQFTSEDE DNNKNSSSSS DLMLDFEMDE ELLSDLLNAD  240
FSLLNYNLEN GAASETNTVC EHPKLSLNSE KTLLLLDDEI QDSGFPSMDA LIEFGEINWI  300
QDLENKGAAE EEKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G020600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346831e-33KM034683.1 Jatropha curcas clone JcMYB063 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626756.10.0transcription repressor MYB6-like
TrEMBLA0A2C9UX800.0A0A2C9UX80_MANES; Uncharacterized protein
STRINGcassava4.1_022478m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-61myb domain protein 3