PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.10G111800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 561aa MW: 66176.7 Da PI: 8.5007 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 104 | 131 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C +++++ tC++G C+F+H+ Manes.10G111800.1.p 104 WKVAICGDYMKSRfkTCSHGTACNFIHC 131 899************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00361 | 4.7E-11 | 21 | 97 | IPR003954 | RNA recognition motif domain, eukaryote |
Gene3D | G3DSA:3.30.70.330 | 1.5E-21 | 24 | 99 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 9.269 | 25 | 101 | IPR000504 | RNA recognition motif domain |
PRINTS | PR01848 | 4.6E-21 | 30 | 45 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 1.63E-16 | 32 | 102 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 4.6E-21 | 58 | 80 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 4.6E-21 | 85 | 109 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 11.066 | 103 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0066 | 103 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-6 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 4.6E-21 | 123 | 135 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MVLALLGNKM RGSRSVKCCL LCLYTDEEVE RSYEEFYEDV HTELLKYGEI VNFKVCKNGS 60 FHLRGNVYVQ YKSLDSAVLA YHSINGRYFA GKQVKCEFVN VTRWKVAICG DYMKSRFKTC 120 SHGTACNFIH CFRNPGGDYE WADWDKPPPR YWVKRMAALY GYSDKSEYEM DKEKLEHRRM 180 SRVPADTDRF RARSRSRGVD HLLPCSGKSS DHEDRVQQGT HWHRHRDDDR KRDRTLDEKS 240 CEKGYYSSDH RSHDSNSDGS WSDRDFKLDR KQNKHRSYVR KRSKDQHEVS ECSSDWAGGK 300 SKQSIDEADS DRSRKRKKAH HAHNKSSKIL EKEALLDDNR DMKNESHATD GYRSDRDRDR 360 EKCNRARSSR HQSKARSTDY HGDVTIGTGS MEELSHRDKN KGRLDHPIRK SSRHKSNFSD 420 FTDDHWDDRH RTYDSDSNDE WLDKEIHHSH KRRRSKKIEL EISDDGWVIA EKLKEKSYCE 480 ETETGKSHLK RKTLDRPLSR SSHSGRESNE TNSHEEEFNY VDPYNERYMF DHDPRYKPIE 540 EINGQDRWKP ESPDRDGNSI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 5e-14 | 24 | 130 | 64 | 167 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 233 | RHRDDDRKRDR |
2 | 313 | 317 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.10G111800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625816.1 | 0.0 | zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A2C9V6U4 | 0.0 | A0A2C9V6U4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003837m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4713 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 5e-76 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.10G111800.1.p |