PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G185300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 255aa    MW: 29133.2 Da    PI: 9.3636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G185300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51141381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp +    e+e yfFs+r+ ky++g+r+nrat sgyWkatg dk
  Manes.09G185300.1.p  14 LPPGFRFHPTDEELVVQYLKRKVFACPLPA-SIIPEVDVCKSDPWDLPGE---LEQERYFFSTREAKYPNGNRSNRATISGYWKATGIDK 99 
                          79****************************.89***************55...46799******************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++++ +++lvg+kktLvfy+g+ p+g++tdW+mheyrl
  Manes.09G185300.1.p 100 EIVTSkGNQLVGMKKTLVFYRGKPPHGTRTDWIMHEYRL 138
                          *999857778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5810173IPR003441NAC domain
PROSITE profilePS5100557.15414173IPR003441NAC domain
PfamPF023656.1E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFACP LPASIIPEVD VCKSDPWDLP  60
GELEQERYFF STREAKYPNG NRSNRATISG YWKATGIDKE IVTSKGNQLV GMKKTLVFYR  120
GKPPHGTRTD WIMHEYRLVT TEATVCNSPQ KKNSIQIPLV PIENWVLCRI FLKRRSTKNE  180
EENFQIGNKN RVCKLRNTKP VFYDFLTKDR TDLNLGPSCA SSGSSGVTEV SSNESDDHEE  240
SSSCNSFPYF RRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-521217815170NO APICAL MERISTEM PROTEIN
1ut4_B5e-521217815170NO APICAL MERISTEM PROTEIN
1ut7_A5e-521217815170NO APICAL MERISTEM PROTEIN
1ut7_B5e-521217815170NO APICAL MERISTEM PROTEIN
3swm_A6e-521217818173NAC domain-containing protein 19
3swm_B6e-521217818173NAC domain-containing protein 19
3swm_C6e-521217818173NAC domain-containing protein 19
3swm_D6e-521217818173NAC domain-containing protein 19
3swp_A6e-521217818173NAC domain-containing protein 19
3swp_B6e-521217818173NAC domain-containing protein 19
3swp_C6e-521217818173NAC domain-containing protein 19
3swp_D6e-521217818173NAC domain-containing protein 19
4dul_A5e-521217815170NAC domain-containing protein 19
4dul_B5e-521217815170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G185300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051720.0KR605172.1 Manihot esculenta NAC transcription factors 34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624455.10.0NAC domain-containing protein 83-like
SwissprotQ9FY931e-101NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0M4FP120.0A0A0M4FP12_MANES; NAC transcription factors 34
STRINGcassava4.1_014491m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-98NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]