PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G095100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 107aa MW: 12346 Da PI: 7.6413 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.4e-06 | 5 | 27 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs+ L H++ H Manes.09G095100.1.p 5 YTCSFCNKCFSNARALGGHMNIH 27 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.09E-7 | 3 | 32 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-7 | 3 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0014 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.3 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MVRSYTCSFC NKCFSNARAL GGHMNIHRKE RENLRKASDE NLLPLDTSKS MKPVDFPHLD 60 SEEINPLVSE SREDAYMLFS HRQTTQIELD LELRLGPPTH IKHHQR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G095100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622036.1 | 5e-45 | transcriptional regulator TAC1-like | ||||
Swissprot | O80942 | 6e-13 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | A0A2C9V9B0 | 1e-73 | A0A2C9V9B0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033932m | 1e-74 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3335 | 31 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-15 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G095100.1.p |