PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G062200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 274aa    MW: 29500.9 Da    PI: 7.8824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G062200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027117139123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C++sF++   L  H  +H
  Manes.09G062200.1.p 117 YQCKTCNRSFPSFQALGGHRASH 139
                          9***********99999998887 PP
2zf-C2H213.90.00016181203123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Manes.09G062200.1.p 181 HECSICGAEFSSGQALGGHMRRH 203
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.2E-13116141IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-8116139No hitNo description
PROSITE profilePS501579.723117144IPR007087Zinc finger, C2H2
SMARTSM003550.03117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-8176203No hitNo description
Gene3DG3DSA:3.30.160.607.2E-4178203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-13180205IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743181203IPR007087Zinc finger, C2H2
SMARTSM003550.01181203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDAQQVIMDS IKGKRSKRQR LPSPLRLAFT SSSSSAGDGG VERVDNNMSS STSPSTSIEF  60
AESTGGEEED MANCLILLAQ GSVHHQSPKL SEPPAAVALS TTSAPANKVS SGSSYVYQCK  120
TCNRSFPSFQ ALGGHRASHK KPSNKAHNEV IEEVEDRQLL NAMSTNLSLQ MPMNIKTNKV  180
HECSICGAEF SSGQALGGHM RRHRAAFATS STTTRSLVTS SPESQESKKP RNSLLLDLNL  240
PAPEDDLRES NLRFTSKEQV LVFSPSSLVD CHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G062200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624292.10.0zinc finger protein ZAT5-like
TrEMBLA0A2C9VAJ40.0A0A2C9VAJ4_MANES; Uncharacterized protein
STRINGcassava4.1_033732m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-50C2H2 family protein