PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G152700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family DBB
Protein Properties Length: 330aa    MW: 35687.1 Da    PI: 7.5218
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G152700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.7e-07443538
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          C+ +++ e++ fC+ ++  lC+ C    H+       H+
  Manes.05G152700.1.p  4 QCDVCSKDEASVFCTADEAALCDACDHRVHHAnklaskHQ 43
                         7******99******************9964446666666 PP
2zf-B_box24.55.8e-085689738
             zf-B_box  7 peHeekelqlfCedCqqllCedClleeHkg..Ht 38
                         p+++ek++ lfC++++  lC+dC + +Hk   Ht
  Manes.05G152700.1.p 56 PLCDEKRAFLFCQQDRAILCRDCDVPIHKAneHT 89
                         68**************************877875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.85147IPR000315B-box-type zinc finger
CDDcd000215.68E-7347No hitNo description
PfamPF006433.6E-5443IPR000315B-box-type zinc finger
SMARTSM003362.2E-6447IPR000315B-box-type zinc finger
SMARTSM003364.8E-95397IPR000315B-box-type zinc finger
CDDcd000211.99E-95697No hitNo description
PfamPF006431.6E-55789IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKIQCDVCSK DEASVFCTAD EAALCDACDH RVHHANKLAS KHQRFSLLHP SSKNFPLCDE  60
KRAFLFCQQD RAILCRDCDV PIHKANEHTQ KHSRFLLTGV KLSATSALYI PSSSSAVTNG  120
GDLVPDSKSQ KQPSTNKRVP VSLPVSHHPS TAKTSTPNST VNKTLSSNTT VTKALSSTTT  180
GNKALFSDTT VNKAGDNLLI NEGIGSTSSI SEYLIETLPG WHVEDFLDIP STAFGFCKPD  240
DGILPFVGND LGSNITPFSS ETMGIWVPTT PTPLYPSQHY PQMGGQIGLK ETKEATNMKA  300
NNRSWADDAF TVPQISPQST GSKRSTPFW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G152700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614270.10.0B-box zinc finger protein 21-like isoform X1
SwissprotQ9LQZ73e-84BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A2C9VXV40.0A0A2C9VXV4_MANES; Uncharacterized protein
STRINGcassava4.1_011628m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.14e-86salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]